Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f16
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    28   0.80 
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   2.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.2  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   4.3  
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    25   7.5  

>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +2

Query: 50  SQTWFYTYNSAGKTSLKYDVIYFCTQNIELVMISSFDSVNFY*NTLCNFFIYFLFQLQTF 229
           SQ+W+ TYN A K     ++++   ++  +V    F +   Y  T CN     +F +QT 
Sbjct: 287 SQSWYVTYNPACKRVFNINLVH-TLEHPSVVCCVKFSNNGKYLATGCNQAAN-VFDVQTG 344

Query: 230 CSFFV*HD 253
              F  H+
Sbjct: 345 KKLFTLHE 352


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +2

Query: 53  QTWFYTYNSAGKTSLKYDVIYFCTQNIELVMI 148
           + W Y Y  +G+TS++++ +     +I L+++
Sbjct: 72  ERWIYKYTKSGRTSIRFNTLEDIKCSISLLVL 103


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 213  FNCKHSVVFLFSMTATSFMLVFRRNSFKLSKAISR 317
            F+C H + FL      +F L+F R++ KLSK  SR
Sbjct: 3085 FSCLHFIRFL-----NTFCLIFGRDANKLSKEKSR 3114


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 277 KTNIKEVAVMLNKKTTECLQLKQKIDKKIAQRILIKIYTIK**NHNEFN 131
           K N    A    KKT E LQ  Q++ K+IA++ + ++Y I     N++N
Sbjct: 604 KANATASAPNKKKKTVETLQ--QQVIKEIARKEIPRVYKII--QQNQYN 648


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +3

Query: 465 PLGHGACSNRSYCVLFATVVQKKVA 539
           P+ HG+C+   +     +V+Q ++A
Sbjct: 180 PINHGSCTKEEFAEKAVSVIQARIA 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,237
Number of Sequences: 5004
Number of extensions: 43583
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)