Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14f16
(556 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB019510-1|BAA34362.1| 709|Drosophila melanogaster DREF transcr... 32 0.45
BT004872-1|AAO45228.1| 709|Drosophila melanogaster LD24482p pro... 32 0.60
AE014134-1744|AAF52841.1| 709|Drosophila melanogaster CG5838-PA... 32 0.60
AB010823-1|BAA24827.1| 709|Drosophila melanogaster DREF protein. 32 0.60
U19269-3|AAC46508.1| 1072|Drosophila melanogaster Dachshund vari... 29 5.6
BT010231-1|AAQ23549.1| 321|Drosophila melanogaster RE64054p pro... 29 5.6
AE014134-2724|AAX52668.1| 1072|Drosophila melanogaster CG4952-PF... 29 5.6
U19269-2|AAC46507.1| 1074|Drosophila melanogaster Dachshund vari... 28 7.4
U19269-1|AAC46506.1| 1081|Drosophila melanogaster Dachshund prot... 28 7.4
AE014134-2727|AAN10945.1| 1081|Drosophila melanogaster CG4952-PE... 28 7.4
AE014134-2726|AAN10944.1| 1081|Drosophila melanogaster CG4952-PB... 28 7.4
AE014134-2725|AAN10943.1| 1074|Drosophila melanogaster CG4952-PD... 28 7.4
BT023949-1|ABB36453.1| 1312|Drosophila melanogaster IP03879p pro... 28 9.7
AE014298-2334|AAF48566.2| 1311|Drosophila melanogaster CG32577-P... 28 9.7
>AB019510-1|BAA34362.1| 709|Drosophila melanogaster DREF
transcription factor protein.
Length = 709
Score = 32.3 bits (70), Expect = 0.45
Identities = 25/82 (30%), Positives = 41/82 (50%)
Frame = -1
Query: 430 LTPTTLYNNNMSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAV 251
LT L N ++I+N E DL HT+L+ + C +D K LRR I+EVA
Sbjct: 346 LTDFYLANCTLAIINYDEEEDLLHTYLREKNI-PISLCYVSVID--KCLRRVFEIEEVAT 402
Query: 250 MLNKKTTECLQLKQKIDKKIAQ 185
+L++ + +I K+++
Sbjct: 403 LLDQVKDLMQRHSTEIASKVSE 424
>BT004872-1|AAO45228.1| 709|Drosophila melanogaster LD24482p
protein.
Length = 709
Score = 31.9 bits (69), Expect = 0.60
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = -1
Query: 430 LTPTTLYNNNMSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAV 251
LT L N ++I+N E DL HT+L+ + C +D K LRR I+EVA
Sbjct: 346 LTDFYLANCTLAIINYDEEEDLLHTYLREKNI-PISLCYVSVID--KCLRRVFEIEEVAT 402
Query: 250 MLNKKTTECLQLKQKIDKKIAQ 185
+L + + +I K+++
Sbjct: 403 LLEQVKDLMQRHSTEIASKVSE 424
>AE014134-1744|AAF52841.1| 709|Drosophila melanogaster CG5838-PA
protein.
Length = 709
Score = 31.9 bits (69), Expect = 0.60
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = -1
Query: 430 LTPTTLYNNNMSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAV 251
LT L N ++I+N E DL HT+L+ + C +D K LRR I+EVA
Sbjct: 346 LTDFYLANCTLAIINYDEEEDLLHTYLREKNI-PISLCYVSVID--KCLRRVFEIEEVAT 402
Query: 250 MLNKKTTECLQLKQKIDKKIAQ 185
+L + + +I K+++
Sbjct: 403 LLEQVKDLMQRHSTEIASKVSE 424
>AB010823-1|BAA24827.1| 709|Drosophila melanogaster DREF protein.
Length = 709
Score = 31.9 bits (69), Expect = 0.60
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = -1
Query: 430 LTPTTLYNNNMSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAV 251
LT L N ++I+N E DL HT+L+ + C +D K LRR I+EVA
Sbjct: 346 LTDFYLANCTLAIINYDEEEDLLHTYLREKNI-PISLCYVSVID--KCLRRVFEIEEVAT 402
Query: 250 MLNKKTTECLQLKQKIDKKIAQ 185
+L + + +I K+++
Sbjct: 403 LLEQVKDLMQRHSTEIASKVSE 424
>U19269-3|AAC46508.1| 1072|Drosophila melanogaster Dachshund variant
2 protein.
Length = 1072
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 142 NEFNILCAKINDIIF*TCFTSRIVRVKPSLR 50
N +LC K DI++ C T+R + +KP R
Sbjct: 291 NRCKLLCCKDFDILYRDCTTARCLSIKPPER 321
>BT010231-1|AAQ23549.1| 321|Drosophila melanogaster RE64054p
protein.
Length = 321
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 142 NEFNILCAKINDIIF*TCFTSRIVRVKPSLR 50
N +LC K DI++ C T+R + +KP R
Sbjct: 291 NRCKLLCCKDFDILYRDCTTARCLSIKPPER 321
>AE014134-2724|AAX52668.1| 1072|Drosophila melanogaster CG4952-PF,
isoform F protein.
Length = 1072
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 142 NEFNILCAKINDIIF*TCFTSRIVRVKPSLR 50
N +LC K DI++ C T+R + +KP R
Sbjct: 291 NRCKLLCCKDFDILYRDCTTARCLSIKPPER 321
>U19269-2|AAC46507.1| 1074|Drosophila melanogaster Dachshund variant
1 protein.
Length = 1074
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 142 NEFNILCAKINDIIF*TCFTSRIVRVKP 59
N +LC K DI++ C T+R + +KP
Sbjct: 291 NRCKLLCCKDFDILYRDCTTARCLSIKP 318
>U19269-1|AAC46506.1| 1081|Drosophila melanogaster Dachshund
protein.
Length = 1081
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 142 NEFNILCAKINDIIF*TCFTSRIVRVKP 59
N +LC K DI++ C T+R + +KP
Sbjct: 291 NRCKLLCCKDFDILYRDCTTARCLSIKP 318
>AE014134-2727|AAN10945.1| 1081|Drosophila melanogaster CG4952-PE,
isoform E protein.
Length = 1081
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 142 NEFNILCAKINDIIF*TCFTSRIVRVKP 59
N +LC K DI++ C T+R + +KP
Sbjct: 291 NRCKLLCCKDFDILYRDCTTARCLSIKP 318
>AE014134-2726|AAN10944.1| 1081|Drosophila melanogaster CG4952-PB,
isoform B protein.
Length = 1081
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 142 NEFNILCAKINDIIF*TCFTSRIVRVKP 59
N +LC K DI++ C T+R + +KP
Sbjct: 291 NRCKLLCCKDFDILYRDCTTARCLSIKP 318
>AE014134-2725|AAN10943.1| 1074|Drosophila melanogaster CG4952-PD,
isoform D protein.
Length = 1074
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 142 NEFNILCAKINDIIF*TCFTSRIVRVKP 59
N +LC K DI++ C T+R + +KP
Sbjct: 291 NRCKLLCCKDFDILYRDCTTARCLSIKP 318
>BT023949-1|ABB36453.1| 1312|Drosophila melanogaster IP03879p
protein.
Length = 1312
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 555 CSVK-IARLFSGRPSRTKHNXNDYYRRHDPRATNRRINPNTSNLPQ 421
C+V + +FS R SR +H+ N + H P R+I+P+ Q
Sbjct: 506 CTVDGCSMMFSSRRSRNRHSANPNPKLHSPH-LRRKISPHDGRSAQ 550
>AE014298-2334|AAF48566.2| 1311|Drosophila melanogaster CG32577-PA
protein.
Length = 1311
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 555 CSVK-IARLFSGRPSRTKHNXNDYYRRHDPRATNRRINPNTSNLPQ 421
C+V + +FS R SR +H+ N + H P R+I+P+ Q
Sbjct: 505 CTVDGCSMMFSSRRSRNRHSANPNPKLHSPH-LRRKISPHDGRSAQ 549
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,602,267
Number of Sequences: 53049
Number of extensions: 421324
Number of successful extensions: 942
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2131214097
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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