Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f16
         (556 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   6.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.4  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 537 RLFSGRPSRTKHNXNDYYRRHDPRATNRRINPNTSNLPQLLFII 406
           ++ S   ++T HN N+Y   +     N   N N +N  +L + I
Sbjct: 313 KIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYNI 356


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 179 NTLCNFFIYFLFQLQTFCSFFV*HDCHFLYVS 274
           N L N   Y  F+L T C F      +FLY S
Sbjct: 55  NNLLN--AYVRFKLVTDCIFVTSEPGYFLYTS 84


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 15  YYILLFVMMTSYLKLGFTRTILLVKQV*NMMSFIFAH 125
           +YI LFVM+  Y K+ F     +V +     S + AH
Sbjct: 211 FYIPLFVMIQVYYKI-FCAARRIVLEERRAQSHLEAH 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,511
Number of Sequences: 438
Number of extensions: 2914
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)