Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f14
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    28   1.7  
SPAC22H12.01c |mug35|SPAC23G3.13c|sequence orphan|Schizosaccharo...    26   5.2  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    26   5.2  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    26   6.9  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    25   9.1  

>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +1

Query: 97  LNQNSQLNIFLIFLY--RFLSNIHDKTK*PNFNLTKDIQVAVQKKSLYVKFYVSL 255
           L +N    ++ +F Y  R+LS+ +D+T    F    D+ V+++K+S   +   SL
Sbjct: 320 LKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASL 374


>SPAC22H12.01c |mug35|SPAC23G3.13c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 461 ISYLVALNKLYFKLFIYKLNHH-KIRPMYVQLPNQIL 354
           ISYL    K  F++F Y+ +H  K+  +Y +   Q+L
Sbjct: 87  ISYLFEAGKYEFEVFFYQKDHSLKLMGLYDKTQKQLL 123


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 452 LVALNKLYFKLFIYKLNHHKIRPMYVQL 369
           L+  N L FKL I+   HH   P Y+++
Sbjct: 134 LLKYNPLNFKLLIFDEVHHMASPSYLRI 161


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 359 ILNYSHVIHTFRMIIKTIFRCIQN 288
           ILNY    H  RM++K + + I++
Sbjct: 259 ILNYERTTHDMRMVLKKLIKRIEH 282


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 497 APRTRSNSVASGISYLVALNKLYFKLFIYKL 405
           +P T S ++ASGI  L  L++ + K+   KL
Sbjct: 35  SPETSSGALASGILKLTILHQPFIKVHTLKL 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,740
Number of Sequences: 5004
Number of extensions: 57847
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)