Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f14
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    29   0.036
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   4.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 29.5 bits (63), Expect = 0.036
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
 Frame = -2

Query: 473  VASGISYL-VALNKLYFKLFIYKLNHH-KIRPMYVQLPNQILNYSHVIHTFRMIIKTIFR 300
            + SG+ ++ + +N ++  +   K  HH   R   + + N  ++ S++I  F   I  I  
Sbjct: 771  ICSGLVFVQILINGVWMIIDPAKAMHHYPTREDNLLVCNSYVDASYMI-AFAYPIMLIVV 829

Query: 299  CIQNGCLSILFPAENNET*NLT*RLFFCTATWMSFVKLKFG 177
            C     L+   P   NE+ ++   ++     W++FV L FG
Sbjct: 830  CTVYAVLTRKIPEAFNESKHIGFTMYTTCVIWLAFVPLYFG 870


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 452 DMKFRMPRYSIAFAEHTSFLKYLRCPHPK 538
           D+ F    + I  A     ++Y RC +PK
Sbjct: 387 DLNFNEVNFRILNAPVNQLIRYTRCENPK 415


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 646 YRHNYSSAPRRARVTYKAVKGLRIYFVNYVINI 548
           Y++NY++        Y      ++Y+ NY+INI
Sbjct: 96  YKYNYNNKYNYNNNNYNK----KLYYKNYIINI 124


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 169 FYREYWIEIYKEILKK 122
           ++ EYW E++  +LKK
Sbjct: 280 WFSEYWEEVFDCLLKK 295


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 169 FYREYWIEIYKEILKK 122
           ++ EYW E++  +LKK
Sbjct: 370 WFSEYWEEVFDCLLKK 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,342
Number of Sequences: 438
Number of extensions: 4486
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)