Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f13
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...    29   0.75 
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    29   0.75 
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   5.3  
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    25   7.0  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   7.0  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 29  LHARILLAKASFSFEKQMTSFLKFSFEKQMTSSLDCVLHVEFYS 160
           +HA +  A   F+ EK + +F+K  F+K+ + +  C++   F S
Sbjct: 18  IHAAVQ-AMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGS 60


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 431 RSDSDSKFVSVCSASLASCLKLHDDRQ*KYSSTSMTTPISLFKCS 565
           +S SDS   S  S+S +  + L+DD    YSS +  T IS +  S
Sbjct: 112 KSYSDSSTSSARSSSTSGSISLYDDYYPAYSSNAPNTAISNYVSS 156


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -1

Query: 546 MGVVMLVEEY-FYCLSSCNFKQ 484
           +G+V+ +  Y F+C SSC+F Q
Sbjct: 212 VGLVLTILTYVFFCASSCSFNQ 233


>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -1

Query: 597 GTRDIACNNYVEHLNSDMGVVMLVEEYFYCLSSCNFKQDAKLALQTLTNFESLSDLMASY 418
           G+ ++  ++Y  H + D+GV ++    F  L     + D+K  L       ++ DL+ SY
Sbjct: 205 GSSEVGTSSYSHHADIDIGVAVIDRFTFSNLEFLENRVDSKSKL-------TMQDLINSY 257

Query: 417 N 415
           N
Sbjct: 258 N 258


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 589  RHSMQQLRRAFKQRYGXS 536
            R  + +LRRAFK +YG S
Sbjct: 1540 RSQLHELRRAFKVKYGKS 1557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,216
Number of Sequences: 5004
Number of extensions: 47226
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)