Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f13
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81550-5|CAB04479.1|  881|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
           protein R11A8.7b protein.
          Length = 2584

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = -1

Query: 552 SDMGVVMLVEEYFYCLSSCNFKQDAKLALQTLT---NFESLSDLM---ASYNFSTPDLDT 391
           +D G +++VEE     +  NF+QD + AL       +FE +  L+   AS NF +   D 
Sbjct: 563 ADFGSLLIVEEVIRAGADLNFEQDERTALMKAAKGDHFEVVQLLLSKGASVNFKSSKNDA 622

Query: 390 NAYELMDFE*N 358
            A  L   E N
Sbjct: 623 TALSLACSEGN 633


>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
           protein R11A8.7a protein.
          Length = 2606

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = -1

Query: 552 SDMGVVMLVEEYFYCLSSCNFKQDAKLALQTLT---NFESLSDLM---ASYNFSTPDLDT 391
           +D G +++VEE     +  NF+QD + AL       +FE +  L+   AS NF +   D 
Sbjct: 563 ADFGSLLIVEEVIRAGADLNFEQDERTALMKAAKGDHFEVVQLLLSKGASVNFKSSKNDA 622

Query: 390 NAYELMDFE*N 358
            A  L   E N
Sbjct: 623 TALSLACSEGN 633


>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical
           protein R11A8.7b protein.
          Length = 2584

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = -1

Query: 552 SDMGVVMLVEEYFYCLSSCNFKQDAKLALQTLT---NFESLSDLM---ASYNFSTPDLDT 391
           +D G +++VEE     +  NF+QD + AL       +FE +  L+   AS NF +   D 
Sbjct: 563 ADFGSLLIVEEVIRAGADLNFEQDERTALMKAAKGDHFEVVQLLLSKGASVNFKSSKNDA 622

Query: 390 NAYELMDFE*N 358
            A  L   E N
Sbjct: 623 TALSLACSEGN 633


>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical
           protein R11A8.7a protein.
          Length = 2606

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = -1

Query: 552 SDMGVVMLVEEYFYCLSSCNFKQDAKLALQTLT---NFESLSDLM---ASYNFSTPDLDT 391
           +D G +++VEE     +  NF+QD + AL       +FE +  L+   AS NF +   D 
Sbjct: 563 ADFGSLLIVEEVIRAGADLNFEQDERTALMKAAKGDHFEVVQLLLSKGASVNFKSSKNDA 622

Query: 390 NAYELMDFE*N 358
            A  L   E N
Sbjct: 623 TALSLACSEGN 633


>Z81550-5|CAB04479.1|  881|Caenorhabditis elegans Hypothetical
           protein F55F3.4 protein.
          Length = 881

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 29  LHARILLAKASFSFEKQMTSFLKFSFEK-QMTSSLDCVLHVEFYS*SEFKQMTSFLKFSF 205
           +HA I+    +  FE     F+KFS  K  +++ +  VL+ +       K+ +   K +F
Sbjct: 187 IHAAIVSFSKTICFEYHGVGFIKFSMSKCDVSTKITVVLNSDTVFGLSHKEKSILKKINF 246

Query: 206 EK 211
           EK
Sbjct: 247 EK 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,538,267
Number of Sequences: 27780
Number of extensions: 260539
Number of successful extensions: 524
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)