Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14f12
(293 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P08570 Cluster: 60S acidic ribosomal protein P1; n=15; ... 80 8e-15
UniRef50_Q16FG5 Cluster: Acidic ribosomal protein P1, putative; ... 67 6e-11
UniRef50_Q17FT7 Cluster: Acidic ribosomal protein P1, putative; ... 66 1e-10
UniRef50_P05386 Cluster: 60S acidic ribosomal protein P1; n=156;... 58 3e-08
UniRef50_Q16VR0 Cluster: Putative uncharacterized protein; n=1; ... 56 1e-07
UniRef50_P50344 Cluster: 60S acidic ribosomal protein P1; n=14; ... 52 2e-06
UniRef50_Q9FLV1 Cluster: 60s acidic ribosomal protein P1; n=1; A... 46 2e-04
UniRef50_Q0UPB2 Cluster: Putative uncharacterized protein; n=1; ... 42 0.003
UniRef50_Q5CJB8 Cluster: Acidic ribosomal protein P1; n=3; Eimer... 40 0.014
UniRef50_UPI0000F2B32D Cluster: PREDICTED: hypothetical protein;... 37 0.074
UniRef50_Q9HFQ7 Cluster: 60S acidic ribosomal protein P1-A; n=11... 37 0.074
UniRef50_Q7R476 Cluster: GLP_480_102976_103332; n=1; Giardia lam... 37 0.098
UniRef50_Q5DBA6 Cluster: SJCHGC09468 protein; n=1; Schistosoma j... 36 0.13
UniRef50_UPI0000499C26 Cluster: 60S acidic ribosomal protein P1;... 35 0.30
UniRef50_Q4N3J3 Cluster: 60S acidic ribosomal protein P1, putati... 35 0.30
UniRef50_P10622 Cluster: 60S acidic ribosomal protein P1-beta; n... 34 0.69
UniRef50_A0DBJ7 Cluster: Chromosome undetermined scaffold_44, wh... 31 6.4
UniRef50_Q7R992 Cluster: Acidic ribosomal protein P1-hydromedusa... 30 8.5
>UniRef50_P08570 Cluster: 60S acidic ribosomal protein P1; n=15;
Eukaryota|Rep: 60S acidic ribosomal protein P1 -
Drosophila melanogaster (Fruit fly)
Length = 112
Score = 80.2 bits (189), Expect = 8e-15
Identities = 42/79 (53%), Positives = 45/79 (56%)
Frame = -3
Query: 291 AAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXX 112
AA V+VEPYWPGLFAKALEGINV+DLITNIGSGV
Sbjct: 34 AANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEK 93
Query: 111 XXXXXXXESDDDMGFGLFD 55
+SDDDMGFGLFD
Sbjct: 94 KKEEESDQSDDDMGFGLFD 112
>UniRef50_Q16FG5 Cluster: Acidic ribosomal protein P1, putative;
n=2; Aedes aegypti|Rep: Acidic ribosomal protein P1,
putative - Aedes aegypti (Yellowfever mosquito)
Length = 106
Score = 67.3 bits (157), Expect = 6e-11
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = -3
Query: 288 AAVDVEPYWPGLFAKALEGINVRDLITNIGSGV 190
A VD+EPYWPGLF KALEGINV+DLITNIGSGV
Sbjct: 43 ANVDIEPYWPGLFTKALEGINVKDLITNIGSGV 75
>UniRef50_Q17FT7 Cluster: Acidic ribosomal protein P1, putative;
n=1; Aedes aegypti|Rep: Acidic ribosomal protein P1,
putative - Aedes aegypti (Yellowfever mosquito)
Length = 88
Score = 66.5 bits (155), Expect = 1e-10
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = -3
Query: 288 AAVDVEPYWPGLFAKALEGINVRDLITNIGSGV 190
A VD+EPYWP LFAKALEGINV+DLITNIGSGV
Sbjct: 6 ANVDIEPYWPALFAKALEGINVKDLITNIGSGV 38
>UniRef50_P05386 Cluster: 60S acidic ribosomal protein P1; n=156;
Eukaryota|Rep: 60S acidic ribosomal protein P1 - Homo
sapiens (Human)
Length = 114
Score = 58.4 bits (135), Expect = 3e-08
Identities = 33/81 (40%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = -3
Query: 291 AAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXXXXXXXXXXXXX 118
AA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 34 AAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKK 93
Query: 117 XXXXXXXXXESDDDMGFGLFD 55
ESDDDMGFGLFD
Sbjct: 94 VEAKKEESEESDDDMGFGLFD 114
>UniRef50_Q16VR0 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 88
Score = 56.4 bits (130), Expect = 1e-07
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = -3
Query: 285 AVDVEPYWPGLFAKALEGINVRDLITNIGS 196
A +VEPYW LFAKALEGINV+DLITNIGS
Sbjct: 59 AANVEPYWRALFAKALEGINVKDLITNIGS 88
>UniRef50_P50344 Cluster: 60S acidic ribosomal protein P1; n=14;
Dikarya|Rep: 60S acidic ribosomal protein P1 -
Cladosporium herbarum (Davidiella tassiana)
Length = 110
Score = 52.4 bits (120), Expect = 2e-06
Identities = 31/79 (39%), Positives = 37/79 (46%)
Frame = -3
Query: 291 AAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXX 112
A ++EP W LFAKALEG +V+DL+ N+GSG
Sbjct: 34 AKVPEIEPIWTSLFAKALEGKDVKDLLLNVGSG--GGAAPAAGGAAAGGAAAVLDAPAEE 91
Query: 111 XXXXXXXESDDDMGFGLFD 55
ESDDDMGFGLFD
Sbjct: 92 KAEEEKEESDDDMGFGLFD 110
>UniRef50_Q9FLV1 Cluster: 60s acidic ribosomal protein P1; n=1;
Arabidopsis thaliana|Rep: 60s acidic ribosomal protein
P1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 111
Score = 45.6 bits (103), Expect = 2e-04
Identities = 28/78 (35%), Positives = 33/78 (42%)
Frame = -3
Query: 288 AAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXX 109
A V+VE YWP LFAK E N+ DLI N+G+G
Sbjct: 34 ANVNVESYWPSLFAKLCEKKNIDDLIMNVGAGGCGVARPVTTAAPTASQSVSIPEEKKNE 93
Query: 108 XXXXXXESDDDMGFGLFD 55
ES+DDM GLFD
Sbjct: 94 MEVIKEESEDDMIIGLFD 111
>UniRef50_Q0UPB2 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 114
Score = 41.9 bits (94), Expect = 0.003
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -3
Query: 291 AAAVDVEPYWPGLFAKALEGINVRDLITNIGS 196
A DVEP W LFAKALEG +V+D++T + S
Sbjct: 35 AGIEDVEPIWTTLFAKALEGKDVKDILTEVAS 66
>UniRef50_Q5CJB8 Cluster: Acidic ribosomal protein P1; n=3;
Eimeriorina|Rep: Acidic ribosomal protein P1 -
Cryptosporidium hominis
Length = 124
Score = 39.5 bits (88), Expect = 0.014
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = -3
Query: 291 AAAVDVEPYWPGLFAKALEGINVRDLITNIGS 196
AA VEPY+PGLFA+AL NV D++ G+
Sbjct: 44 AAGGSVEPYFPGLFAQALSTTNVSDIVAGCGA 75
>UniRef50_UPI0000F2B32D Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 103
Score = 37.1 bits (82), Expect = 0.074
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = -3
Query: 291 AAAVDVEPYWPGLFAKALEGI 229
AA ++VEP+WPGLFAK+L +
Sbjct: 47 AAGINVEPFWPGLFAKSLNNV 67
>UniRef50_Q9HFQ7 Cluster: 60S acidic ribosomal protein P1-A; n=11;
Eukaryota|Rep: 60S acidic ribosomal protein P1-A -
Candida albicans (Yeast)
Length = 106
Score = 37.1 bits (82), Expect = 0.074
Identities = 26/78 (33%), Positives = 32/78 (41%)
Frame = -3
Query: 288 AAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXX 109
A V+VE W LFAKALEG ++++ N +
Sbjct: 33 ANVEVEGIWADLFAKALEGKDLKEFFFNFSAA----PAAAAAGGAAGGGAAAEEAAEEEK 88
Query: 108 XXXXXXESDDDMGFGLFD 55
ESDDDMGFGLFD
Sbjct: 89 EEEAKEESDDDMGFGLFD 106
>UniRef50_Q7R476 Cluster: GLP_480_102976_103332; n=1; Giardia
lamblia ATCC 50803|Rep: GLP_480_102976_103332 - Giardia
lamblia ATCC 50803
Length = 118
Score = 36.7 bits (81), Expect = 0.098
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = -3
Query: 291 AAAVDVEPYWPGLFAKALEGINVRDLITNIGS 196
AA V V+ W LFA LEG NV++L+T +GS
Sbjct: 33 AAGVKVDSIWFTLFANYLEGKNVKELLTTLGS 64
>UniRef50_Q5DBA6 Cluster: SJCHGC09468 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09468 protein - Schistosoma
japonicum (Blood fluke)
Length = 116
Score = 36.3 bits (80), Expect = 0.13
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Frame = -3
Query: 276 VEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 97
VE Y P LFA +L G NV+DL+ ++GS
Sbjct: 39 VESYLPNLFATSLNGKNVKDLLMSMGSPAPSAAVTSAVPTAASATSAAAEKPKEAVKEEK 98
Query: 96 XXESDDD----MGFGLFD 55
SDDD +GFGLFD
Sbjct: 99 KVVSDDDSDESIGFGLFD 116
>UniRef50_UPI0000499C26 Cluster: 60S acidic ribosomal protein P1;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: 60S acidic
ribosomal protein P1 - Entamoeba histolytica HM-1:IMSS
Length = 106
Score = 35.1 bits (77), Expect = 0.30
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -3
Query: 288 AAVDVEPYWPGLFAKALEGINVRDLITNIGS 196
A + VE +WP + AKAL N+ DLI + GS
Sbjct: 38 ANIKVEGFWPIIMAKALTNANIEDLIMDAGS 68
>UniRef50_Q4N3J3 Cluster: 60S acidic ribosomal protein P1, putative;
n=2; Theileria|Rep: 60S acidic ribosomal protein P1,
putative - Theileria parva
Length = 117
Score = 35.1 bits (77), Expect = 0.30
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = -3
Query: 291 AAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 193
AA D++P+ P LFA+AL+G ++ L++ +GSG
Sbjct: 44 AAKGDMQPFTPMLFARALKGKDLGSLLSAVGSG 76
>UniRef50_P10622 Cluster: 60S acidic ribosomal protein P1-beta;
n=21; Ascomycota|Rep: 60S acidic ribosomal protein
P1-beta - Saccharomyces cerevisiae (Baker's yeast)
Length = 106
Score = 33.9 bits (74), Expect = 0.69
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = -3
Query: 291 AAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXX 112
AA +V+ W ++AKALEG +++++++ +
Sbjct: 31 AAGANVDNVWADVYAKALEGKDLKEILSGFHNA---GPVAGAGAASGAAAAGGDAAAEEE 87
Query: 111 XXXXXXXESDDDMGFGLFD 55
ESDDDMGFGLFD
Sbjct: 88 KEEEAAEESDDDMGFGLFD 106
>UniRef50_A0DBJ7 Cluster: Chromosome undetermined scaffold_44, whole
genome shotgun sequence; n=8; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_44,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 122
Score = 30.7 bits (66), Expect = 6.4
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 291 AAAVDVEPYWPGLFAKALEGINVRDLI-TNIGS 196
AA + VEP W +F KAL+G V DL+ N GS
Sbjct: 46 AANLRVEPIWTKVFEKALKGKKVGDLLHGNSGS 78
>UniRef50_Q7R992 Cluster: Acidic ribosomal protein P1-hydromedusa;
n=5; Plasmodium|Rep: Acidic ribosomal protein
P1-hydromedusa - Plasmodium yoelii yoelii
Length = 119
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 276 VEPYWPGLFAKALEGINVRDLITNIGSG 193
V PY P LF KAL+G ++ L++N+ G
Sbjct: 49 VLPYLPMLFEKALKGKDIEGLLSNLSVG 76
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,467,512
Number of Sequences: 1657284
Number of extensions: 2008200
Number of successful extensions: 5302
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5299
length of database: 575,637,011
effective HSP length: 75
effective length of database: 451,340,711
effective search space used: 9929495642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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