Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f12
         (293 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    63   3e-11
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    60   4e-10
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    29   0.76 
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    29   0.76 
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    29   0.76 
AC024759-4|AAK68434.1|  356|Caenorhabditis elegans Hypothetical ...    25   9.4  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 35/79 (44%), Positives = 42/79 (53%)
 Frame = -3

Query: 291 AAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXX 112
           AA V+ EPYWPGLFAKALEG++V++LIT++ SG                           
Sbjct: 34  AANVEFEPYWPGLFAKALEGVDVKNLITSVSSGA-GSGPAPAAAAAAPAAGGAAPAAETK 92

Query: 111 XXXXXXXESDDDMGFGLFD 55
                  ESDDDMGFGLFD
Sbjct: 93  KKEEPKEESDDDMGFGLFD 111


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 34/79 (43%), Positives = 41/79 (51%)
 Frame = -3

Query: 291 AAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXX 112
           AA V+ EP WPGLFAKALEG++V++LIT++ SG                           
Sbjct: 34  AANVEFEPNWPGLFAKALEGVDVKNLITSVSSGA-GSGPAPAAAAAAPAAGGAAPAAETK 92

Query: 111 XXXXXXXESDDDMGFGLFD 55
                  ESDDDMGFGLFD
Sbjct: 93  KKEEPKEESDDDMGFGLFD 111


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = -3

Query: 87  SDDDMGFGLFD 55
           SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = -3

Query: 87  SDDDMGFGLFD 55
           SDDDMGFGLFD
Sbjct: 97  SDDDMGFGLFD 107


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = -3

Query: 87  SDDDMGFGLFD 55
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>AC024759-4|AAK68434.1|  356|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.4 protein.
          Length = 356

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 214 DHQHRLWSG 188
           DH HRLWSG
Sbjct: 225 DHNHRLWSG 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,629,819
Number of Sequences: 27780
Number of extensions: 43799
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)