Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f12
         (293 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   3.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   4.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   5.5  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    19   9.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
 Frame = +2

Query: 2   KLYNRQNGIF-----LFLHKAS*SKRPKPM 76
           +LY+RQNG+      L L K   + +P PM
Sbjct: 282 RLYDRQNGLVLSRMNLTLAKMEKTSKPLPM 311


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 38  LHKAS*SKRPKP 73
           LH+AS SK P+P
Sbjct: 554 LHRASLSKTPQP 565


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 267 YWPGLFAKALEGINVRDLITN 205
           +WP   + ALEG + +  I N
Sbjct: 223 FWPSFNSAALEGDDQQRAIIN 243


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 255 LFAKALEGINVRDL 214
           LFA+ + GIN R++
Sbjct: 37  LFARCMGGINSRNM 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,354
Number of Sequences: 438
Number of extensions: 490
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)