Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14f10
(501 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 205 3e-54
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 204 4e-54
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 28 0.91
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 0.91
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 27 1.6
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 2.1
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 2.1
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 6.4
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.4
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 6.4
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 25 8.4
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 25 8.4
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 8.4
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 8.4
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 8.4
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 8.4
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 25 8.4
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 8.4
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 25 8.4
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 205 bits (500), Expect = 3e-54
Identities = 100/154 (64%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Frame = -3
Query: 460 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 281
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 280 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 101
TG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 100 AAGKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPI 2
A GKTV L+RQPAPP AH VS +PV L P+
Sbjct: 121 AQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPV 154
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 204 bits (499), Expect = 4e-54
Identities = 100/154 (64%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Frame = -3
Query: 460 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 281
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 280 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 101
TG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 100 AAGKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPI 2
A GKTV L+RQPAPP AH VS +PV L P+
Sbjct: 121 AQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPV 154
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 27.9 bits (59), Expect = 0.91
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +2
Query: 20 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 184
GF S+T SF+G W+ L + + G L G LQ + +++SL EV ++ + L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503
Query: 185 TDIDAFRYN 211
+ RY+
Sbjct: 504 RAFGSIRYS 512
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 0.91
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 348 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF 464
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 27.1 bits (57), Expect = 1.6
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +2
Query: 89 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDAFRYNPSANTLVDNHTESV 253
+A SLG Q +L +LSA G M D+ + PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 2.1
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3
Query: 450 EFVIFEPCVTKLDG 491
EFVIFE C+T+++G
Sbjct: 726 EFVIFEACLTRIEG 739
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = -2
Query: 380 LHVHESVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRY 258
L H SW + R+ C +KGY PW + Y
Sbjct: 202 LDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCAFDAY 242
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 6.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 163 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 68
K DF KR E +R+ +E A KTV L Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 6.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 109 EAKAAGKTVNLKRQPAPPKAAHIVSGT 29
+ KA K + +QP+PP A H + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 6.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 194 DAFRYNPSANTLVDNHTES 250
D R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 497 SRSVKLCNT-RLEDDELQGLPPRHQGLVRSQVPH 399
S S++ C T R DD + R G +R + PH
Sbjct: 610 SISIQDCETDRANDDTILNNRVRRSGTIREEAPH 643
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 89 LAGSLGFLQ*PLILFDSLKEVLSALGV 169
LAG L F + LFD LKE+ GV
Sbjct: 22 LAGDLVFRPNAIELFDELKEICKDAGV 48
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1
Query: 180 SMSSTPSADKTSLRE 136
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -3
Query: 142 KRVKENERLLK-EAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVL 14
K+ KE + LK E+ T + QP P SGTE V+
Sbjct: 269 KKKKEQKWTLKFESDKGTSTQCITHQPLPGSTPSFASGTENGVI 312
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 142 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 20
K +++ ER+ K + NL+R PPK + +E P
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 8.4
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = +2
Query: 65 WLSLQVDGLAGSLGF 109
WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = -2
Query: 374 VHESVQSWRHCRHQRQWCSSKGYA---TQSIPWKDRSRVQRYCSRS 246
+ E S HC R WCSS A TQ + V +Y S S
Sbjct: 19 IEEPKLSCCHCETCRIWCSSPFMAFSCTQKPSVSENENVGKYASSS 64
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.6 bits (51), Expect = 8.4
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Frame = -3
Query: 361 YKVGDIVDIRGNGAVQKGMPHKV------YHGKTGRVY---NVTAHALGVIVNKRVRGRI 209
Y VGD VD+ NG V M ++ + TG+V N + L ++ +R G
Sbjct: 658 YDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVIQAPNSLLNTLWILNMRRSDGIA 717
Query: 208 IPKRINIR----VEHVKHSKCR-QDFLKRVKEN 125
P +N++ ++ ++ + + DFLK K +
Sbjct: 718 DPVTVNLKFGTTLQQIEQLRIKIIDFLKEEKRD 750
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 395 WNYPALHVHESVQSWRHCRH 336
WN P+ H S Q+W R+
Sbjct: 113 WNQPSHPTHPSPQNWSQARY 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,996,355
Number of Sequences: 5004
Number of extensions: 39639
Number of successful extensions: 168
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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