Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14f10
(501 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra... 27 0.36
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein. 27 0.47
DQ219482-1|ABB29886.1| 545|Anopheles gambiae cryptochrome 1 pro... 25 1.9
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein. 25 1.9
AY903308-1|AAX48940.1| 241|Anopheles gambiae female-specific do... 23 4.4
AY903307-1|AAX48939.1| 283|Anopheles gambiae male-specific doub... 23 4.4
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript... 23 4.4
DQ137802-1|AAZ78363.1| 265|Anopheles gambiae female-specific do... 23 5.8
DQ137801-1|AAZ78362.1| 622|Anopheles gambiae male-specific doub... 23 5.8
AJ130951-1|CAA10260.1| 189|Anopheles gambiae SG3 protein protein. 23 5.8
AJ302655-1|CAC35520.1| 332|Anopheles gambiae gSG5 protein protein. 23 7.7
>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
transcriptase protein.
Length = 1049
Score = 27.1 bits (57), Expect = 0.36
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 308 YATQSIPWKDRSRVQRYCSRSR 243
YA + +PW+DR+ + Y +R R
Sbjct: 928 YALRLLPWQDRNNLPPYAARCR 949
>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
Length = 1212
Score = 26.6 bits (56), Expect = 0.47
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 157 RQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPP 56
R++ +R +E +L EA A + N + QP PP
Sbjct: 1101 REEDERRTEERRQLHNEANRAYRQRNRRSQPTPP 1134
>DQ219482-1|ABB29886.1| 545|Anopheles gambiae cryptochrome 1
protein.
Length = 545
Score = 24.6 bits (51), Expect = 1.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 419 VRSQVPHTWNYPALHVHESVQSWRHCRHQR 330
V+ +P NYPA VHE W+ R Q+
Sbjct: 451 VKRYLPELANYPAQFVHE---PWKASREQQ 477
>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
Length = 1132
Score = 24.6 bits (51), Expect = 1.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -3
Query: 172 KHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 29
KH C + +E +++ KEA +T+NL + +A + GT
Sbjct: 323 KHRLCELNREPTEREEQQMQKEAAVMARTMNLNQVCLCFRAYRVEPGT 370
>AY903308-1|AAX48940.1| 241|Anopheles gambiae female-specific
doublesex protein protein.
Length = 241
Score = 23.4 bits (48), Expect = 4.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = -2
Query: 266 QRYCSRSRCDCQQAC 222
+RYC C C++ C
Sbjct: 57 KRYCKYRACQCEKCC 71
>AY903307-1|AAX48939.1| 283|Anopheles gambiae male-specific
doublesex protein protein.
Length = 283
Score = 23.4 bits (48), Expect = 4.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = -2
Query: 266 QRYCSRSRCDCQQAC 222
+RYC C C++ C
Sbjct: 57 KRYCKYRACQCEKCC 71
>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
protein.
Length = 1022
Score = 23.4 bits (48), Expect = 4.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 318 TAPLPLMSTMSPTLYTFMYVE 380
TA +P S + PTL+ MY E
Sbjct: 607 TAGVPQGSVLGPTLWNLMYNE 627
>DQ137802-1|AAZ78363.1| 265|Anopheles gambiae female-specific
doublesex protein protein.
Length = 265
Score = 23.0 bits (47), Expect = 5.8
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = -2
Query: 266 QRYCSRSRCDCQQAC 222
+RYC C C++ C
Sbjct: 57 KRYCKYRTCHCEKCC 71
>DQ137801-1|AAZ78362.1| 622|Anopheles gambiae male-specific
doublesex protein protein.
Length = 622
Score = 23.0 bits (47), Expect = 5.8
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = -2
Query: 266 QRYCSRSRCDCQQAC 222
+RYC C C++ C
Sbjct: 57 KRYCKYRTCHCEKCC 71
>AJ130951-1|CAA10260.1| 189|Anopheles gambiae SG3 protein protein.
Length = 189
Score = 23.0 bits (47), Expect = 5.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 258 VTLYTRPVFPWYTLCGIP 311
V ++ RP PW+++ GIP
Sbjct: 73 VGIFGRPGRPWWSVPGIP 90
>AJ302655-1|CAC35520.1| 332|Anopheles gambiae gSG5 protein protein.
Length = 332
Score = 22.6 bits (46), Expect = 7.7
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = -3
Query: 271 VYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERL 116
++ + H GV+V+ + R + EH++H R K + NE++
Sbjct: 117 LFQIGQHVRGVLVSIKSRMMAYTNDAVAKFEHLRHRTMRAVKRKMDELNEQI 168
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,675
Number of Sequences: 2352
Number of extensions: 11216
Number of successful extensions: 69
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44823054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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