Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14f09
(810 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT029690-1|ABL75747.1| 145|Drosophila melanogaster IP17407p pro... 31 1.4
BT029644-1|ABL75703.1| 145|Drosophila melanogaster IP17207p pro... 31 1.4
AE014134-1591|AAF52734.1| 275|Drosophila melanogaster CG9555-PA... 30 3.3
BT021312-1|AAX33460.1| 1215|Drosophila melanogaster RE14947p pro... 30 4.3
AY084135-1|AAL89873.1| 382|Drosophila melanogaster RE21313p pro... 30 4.3
AE014296-3370|AAF51604.1| 382|Drosophila melanogaster CG5199-PA... 30 4.3
AE014134-2679|AAN10933.1| 1170|Drosophila melanogaster CG12455-P... 30 4.3
AE014134-2678|AAF53505.2| 2190|Drosophila melanogaster CG12455-P... 30 4.3
AE014296-583|AAF47729.2| 1427|Drosophila melanogaster CG14964-PA... 29 5.7
K02623-1|AAA28971.1| 284|Drosophila melanogaster protein ( D.me... 29 9.9
K02622-1|AAA28970.1| 257|Drosophila melanogaster protein ( D.me... 29 9.9
AE013599-3867|AAM68313.1| 670|Drosophila melanogaster CG30164-P... 29 9.9
>BT029690-1|ABL75747.1| 145|Drosophila melanogaster IP17407p
protein.
Length = 145
Score = 31.5 bits (68), Expect = 1.4
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -3
Query: 475 AFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMADI 320
AF + A+++++ L+ + L A+T L +A++ L NR+AD+
Sbjct: 79 AFTRSFVLSASKQLVTTDQMLIKSQHSLQSAHTSLQQAQKNAQDLQNRVADV 130
>BT029644-1|ABL75703.1| 145|Drosophila melanogaster IP17207p
protein.
Length = 145
Score = 31.5 bits (68), Expect = 1.4
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -3
Query: 475 AFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMADI 320
AF + A+++++ L+ + L A+T L +A++ L NR+AD+
Sbjct: 79 AFTRSFVLSASKQLVTTDQMLIKSQHSLQSAHTSLQQAQKNAQDLQNRVADV 130
>AE014134-1591|AAF52734.1| 275|Drosophila melanogaster CG9555-PA
protein.
Length = 275
Score = 30.3 bits (65), Expect = 3.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 612 LLFIISWITPSLVMSTVCGC 671
+ FI+ W P L + TVCGC
Sbjct: 210 IYFILDWERPGLAIGTVCGC 229
>BT021312-1|AAX33460.1| 1215|Drosophila melanogaster RE14947p
protein.
Length = 1215
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 523 KMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANA 398
KM+ NY I+ + F +S E E I+H NA+V A
Sbjct: 586 KMNPNYNSIDFTEVEHLFEDQSPREPGESILHIRNAMVRHEA 627
>AY084135-1|AAL89873.1| 382|Drosophila melanogaster RE21313p
protein.
Length = 382
Score = 29.9 bits (64), Expect = 4.3
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 136 VLNKVK-ETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTGTSD 2
V+ K+K E P Q +LLQ L++EQLID + +++ SD
Sbjct: 175 VVKKLKMEDRPVGQTNTDATLPSLLQGLSQEQLIDLIMNNIKSASD 220
>AE014296-3370|AAF51604.1| 382|Drosophila melanogaster CG5199-PA
protein.
Length = 382
Score = 29.9 bits (64), Expect = 4.3
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 136 VLNKVK-ETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTGTSD 2
V+ K+K E P Q +LLQ L++EQLID + +++ SD
Sbjct: 175 VVKKLKMEDRPVGQTNTDATLPSLLQGLSQEQLIDLIMNNIKSASD 220
>AE014134-2679|AAN10933.1| 1170|Drosophila melanogaster CG12455-PB,
isoform B protein.
Length = 1170
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 523 KMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANA 398
KM+ NY I+ + F +S E E I+H NA+V A
Sbjct: 541 KMNPNYNSIDFTEVEHLFEDQSPREPGESILHIRNAMVRHEA 582
>AE014134-2678|AAF53505.2| 2190|Drosophila melanogaster CG12455-PA,
isoform A protein.
Length = 2190
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 523 KMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANA 398
KM+ NY I+ + F +S E E I+H NA+V A
Sbjct: 548 KMNPNYNSIDFTEVEHLFEDQSPREPGESILHIRNAMVRHEA 589
>AE014296-583|AAF47729.2| 1427|Drosophila melanogaster CG14964-PA
protein.
Length = 1427
Score = 29.5 bits (63), Expect = 5.7
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -3
Query: 568 VIPQVLCTGKYAPA-VKMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGL 392
++P P+ +KMD G+ ++ A+E EANE+I +N L NA
Sbjct: 1050 IVPPTATVANSNPSTLKMDLAKGIKSFFSRDKRSATEKNTEANEEI---SNPLERTNAAA 1106
Query: 391 VQANTMLNEARRETAQLANR 332
+ A+ + +E +L +
Sbjct: 1107 IAADLEVKRKAKEEEELRRK 1126
>K02623-1|AAA28971.1| 284|Drosophila melanogaster protein (
D.melanogaster tropomyosinisoform 127 gene, exon 3. ).
Length = 284
Score = 28.7 bits (61), Expect = 9.9
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = -3
Query: 523 KMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQ 344
K DT ++ N + +E + + +K + LVTA L +ANT L E +
Sbjct: 21 KADTCENQAKDANSRADKLNEEVRDLEKKFVQVEIDLVTAKEQLEKANTELEEKEKLLTA 80
Query: 343 LANRMADIAQDV 308
+ +A + + V
Sbjct: 81 TESEVATLNRKV 92
>K02622-1|AAA28970.1| 257|Drosophila melanogaster protein (
D.melanogaster genefor tropomyosin isoforms 127 and 129,
exons 1 and 2. ).
Length = 257
Score = 28.7 bits (61), Expect = 9.9
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = -3
Query: 523 KMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQ 344
K DT ++ N + +E + + +K + LVTA L +ANT L E +
Sbjct: 21 KADTCENQAKDANSRADKLNEEVRDLEKKFVQVEIDLVTAKEQLEKANTELEEKEKLLTA 80
Query: 343 LANRMADIAQDV 308
+ +A + + V
Sbjct: 81 TESEVATLNRKV 92
>AE013599-3867|AAM68313.1| 670|Drosophila melanogaster CG30164-PA
protein.
Length = 670
Score = 28.7 bits (61), Expect = 9.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 223 ARAETHTFLRLTHTRPTNVAVGDC*VWLSRLAQCPPCGWP 342
A HT L L + T +++G+ WLS +CP WP
Sbjct: 179 AEISAHTGLELAYDSLTTLSLGEY-GWLSAPMRCPAKRWP 217
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,318,329
Number of Sequences: 53049
Number of extensions: 800189
Number of successful extensions: 2394
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2390
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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