Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14f08
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 30 0.26
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 29 0.46
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 29 0.60
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.4
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 2.4
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 2.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.2
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 26 4.2
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 4.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.2
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 26 4.2
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 5.6
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 5.6
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 7.4
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 7.4
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 7.4
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 7.4
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 7.4
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 30.3 bits (65), Expect = 0.26
Identities = 20/77 (25%), Positives = 30/77 (38%)
Frame = -3
Query: 648 KPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 469
+PPS A+ + + P P P + + NP TP+ P + A + L
Sbjct: 245 RPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF-SPINPYYAKSWNHTASAPLLP 303
Query: 468 PSSLGMAKGVSPPYFQV 418
P G+ G PY V
Sbjct: 304 P---GLKNGSDYPYLSV 317
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.5 bits (63), Expect = 0.46
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -3
Query: 642 PSPAISXTSTRSSN---PRFHTPTTPDLTSIS-INPLTPY*KEFAPGLKP 505
P P+IS T+T SS H PTTPD ++ + L P +P KP
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPDHFKLTPLTKLEPQPPSGSPSKKP 322
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 29.1 bits (62), Expect = 0.60
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = -3
Query: 633 AISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLG 454
A+ T T S+NP T I N + K F+ PP++++ P +L P+S
Sbjct: 683 ALPATVTTSANPLGFKSTIQRPIPIKNNEDSDSCKAFSQA--PPIATKKPPTFLKPNSPE 740
Query: 453 MAKGVSP 433
AK V P
Sbjct: 741 YAKTVIP 747
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 39 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 167
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = -3
Query: 645 PPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP 484
PP PA + ++ SS+P T +T TS SI P P + PP SS P
Sbjct: 370 PPPPASTSSTGTSSSPLLST-STSCTTSTSIPPTGNSTTPVTPTV-PPTSSSTP 421
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 194 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 99
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -1
Query: 293 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 114
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 113 LSASIQASLPSSEIYRQL 60
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 3.2
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Frame = -3
Query: 651 IKPPSPAISXTSTRSSNPRF--HTPTTP-DLTSISINPLTPY*KEFAPGLKPPLSSEAPS 481
+ P SP ++ S SS+P P TP + S ++NP Y + PP A
Sbjct: 960 VAPQSP-VAAASRISSSPNMPPSNPYTPIAVASSTVNPAHTYKPHGGSQIVPPPKQPANR 1018
Query: 480 AY-LTPSSLGMAKGVSPPYFQVNDESQAS 397
L P++ A PP V S S
Sbjct: 1019 VVPLPPTASQRASAYEPPTVSVPSPSALS 1047
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 3.2
Identities = 22/69 (31%), Positives = 27/69 (39%)
Frame = -3
Query: 636 PAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSL 457
P I S+ SS P P P + PL P + P PP APS P L
Sbjct: 325 PPIGNGSSNSSLPP--PPPPPRSNAAGSIPLPPQGRSAPP---PPPPRSAPSTGRQPPPL 379
Query: 456 GMAKGVSPP 430
++ VS P
Sbjct: 380 SSSRAVSNP 388
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 639 SPAISXTSTRSSNPRFHTPTTPDLTSIS 556
S IS +ST N FH PT TS S
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSS 828
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 4.2
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Frame = -3
Query: 639 SPAISXTSTRSS-NPRFHTPTTPDLTSISINPLTP-----Y*KEFAPGLKPPLSSEAPSA 478
SP +S S +P P+TP + SI+P TP Y + A L PLS + +A
Sbjct: 284 SPELSADKVLSHCSPIDARPSTPSCPNASISPKTPNTGDHYGFDGAEYLGTPLSVGSTTA 343
Query: 477 YL 472
YL
Sbjct: 344 YL 345
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 404 KLRALLVVIPRILRSPPPTHPLIEDV 327
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = -3
Query: 621 TSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKG 442
TST ++ +TP +S ++N TP P++S TP + A
Sbjct: 1592 TSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALN 1651
Query: 441 VSPP 430
SPP
Sbjct: 1652 TSPP 1655
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = -3
Query: 639 SPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSS 460
S + TST ++ +TP +S +N TP A P++S + TP +
Sbjct: 1718 SSTVVNTSTPITSSTVVNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPIT 1777
Query: 459 LGMAKGVSPP 430
A S P
Sbjct: 1778 SSTALNTSTP 1787
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = -3
Query: 621 TSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKG 442
TST ++ +TP +S +N TP A PP++S TP +
Sbjct: 1616 TSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTVVN 1675
Query: 441 VSPP 430
S P
Sbjct: 1676 TSTP 1679
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -3
Query: 648 KPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 469
+PPSP I R+S F +PT S+ + + G+ P SS A A+L+
Sbjct: 494 RPPSPGIVTPPQRTSPSFFVSPTESTRQSLDSRRSFEHSTSSSSGISPSHSS-ASLAHLS 552
Query: 468 PSS 460
+S
Sbjct: 553 QAS 555
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -3
Query: 633 AISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSS 460
A+ ++ S F PTT S+SI+P K A +P + ++ S TP++
Sbjct: 69 AVETNASASHETSFALPTTSPAASLSISPT----KSAAVSSEPNVEADVKSLSSTPAA 122
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 28 KESEETWRESTNWR*ISEEG 87
KE E W + NW+ SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 269 LVTHKELALKVSSIIGTRVYVFDPSCY 189
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 7.4
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 594 FHTPTTPDLTSISINPLTP-Y*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQV 418
FHTPT P T +S +P + + PLS +A S LT S L + SPP V
Sbjct: 139 FHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTSSPLKDFQS-SPPLSTV 195
Query: 417 NDESQA 400
+S +
Sbjct: 196 LQKSHS 201
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -3
Query: 651 IKPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPG--LKPPLSSEAPSA 478
I+ S + TS S++ ++ +TP+ S + LTP + L+ PL +PSA
Sbjct: 294 IRSHSTNTTITSVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSA 353
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 658 LMHQATLPCDLGYINPIIKSPIPYTNHP 575
+ HQA L C GY + + +P+ N P
Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 54 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 155
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,016
Number of Sequences: 5004
Number of extensions: 53536
Number of successful extensions: 267
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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