Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14f08
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 34 0.12
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 33 0.20
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 32 0.47
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 1.1
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 30 1.9
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 29 2.5
12_01_0302 - 2286171-2286341,2286747-2286968 29 2.5
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 29 3.3
02_02_0691 + 12999452-12999820 29 3.3
02_01_0302 - 2021221-2023305 29 4.4
11_06_0610 - 25449085-25453284 28 5.8
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 28 5.8
05_01_0493 + 4113869-4116728,4116859-4117370 28 7.7
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 7.7
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = -3
Query: 645 PPSPAISXTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 475
P SP+ S TS + S ++PT+P TS +P +P +P P PS
Sbjct: 1761 PTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHA 1820
Query: 474 LTPSSLGMAKGVSPPY 427
+PSS SP Y
Sbjct: 1821 YSPSSPNYYSSTSPTY 1836
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 33.1 bits (72), Expect = 0.20
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = -3
Query: 645 PPSPAISXTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 475
P SP+ S TS + S ++PT+P TS S +P +P +P P + +PS
Sbjct: 1699 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHA 1758
Query: 474 LTPSS--LGMAKGVSPPY 427
+PSS L SP Y
Sbjct: 1759 YSPSSPRLSPYSQTSPNY 1776
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -3
Query: 651 IKPPSPAISXTSTR-SSNPR--FHTPTTPDLTSISINPLTP 538
I PPSPA + S+R S +PR F TP T T+ S +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 633 AISXTSTRSSNPRFHTPTTP 574
A S T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -3
Query: 645 PPSPAISXTSTRSSNPRFHTPT---TPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAY 475
PPSP+I + T +TPT TP S +P TP + P + +PS+
Sbjct: 105 PPSPSIGTSPTTPGGGGGYTPTPSDTPPSPSSDTSPSTPG-GGCSSSPTPCDAPPSPSSD 163
Query: 474 LTPSSLGMAKGVSP 433
+P++ G G SP
Sbjct: 164 TSPTTPGGGGGYSP 177
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = -3
Query: 663 SPLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP 484
SP+ + P ++S T S+ R P + S P TP A L PP S +P
Sbjct: 152 SPIRLSPSPRSMSRTRPSSAASRSSPPFALQPPTPSWRPSTP---PSAKTLTPPRRSPSP 208
Query: 483 SAYLTP 466
++ LTP
Sbjct: 209 ASTLTP 214
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 14 YARLQRSRKKHGENLPTGGRSRRKGEKLE*MQREEQ 121
+ARL+R RK + ++ G + +GEKLE + +E+
Sbjct: 55 WARLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 663 SPLCIKPPSPAISXTSTRSSNPRFHTPTTPD 571
SP + P +PA S +S SS+P TP + D
Sbjct: 326 SPQSVVPSNPAASSSSVASSSPALATPESRD 356
>02_02_0691 + 12999452-12999820
Length = 122
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/77 (32%), Positives = 28/77 (36%)
Frame = +2
Query: 431 GGETPLAMPSDEGVRYADGASDDNGGFNPGANSF*YGVRGLMEMDVKSGVVGVWNRGFDD 610
G E P+ P G R A G+ G P A G RG E +S G
Sbjct: 11 GSEAPVVAPKPRGWRMAVGSIGGGGISPPVARG---GRRGERERGRRSA-----GGGLTG 62
Query: 611 RVDVXEIAGEGGLMHKG 661
VD AGE G H G
Sbjct: 63 AVDAFRPAGEAGRQHAG 79
>02_01_0302 - 2021221-2023305
Length = 694
Score = 28.7 bits (61), Expect = 4.4
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTS--ISINPLTPY*KE-----FA--PGLKPPLSSE 490
PSP S T+ S +P TPT P S ++ P P + FA PG P+ S
Sbjct: 519 PSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPPTSADRPDVRFAPPPGSYGPIPST 578
Query: 489 APSAYLTPSSLGMAKGVSPP 430
PS+ PS + G PP
Sbjct: 579 PPSSGSPPSP---SSGYQPP 595
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 645 PPSPAISXTSTRSSNPRFHTPTTPDLTSIS-INPLTPY*KEFAPGLKPPLSSE 490
PP+P +S P HTP+ P+ T S +P TP K +P PP + E
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP---PPPTPE 667
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/72 (27%), Positives = 26/72 (36%)
Frame = -3
Query: 645 PPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 466
PP+P + + RF T +TPD ++ P AP PP P P
Sbjct: 307 PPAPPPARSRRTPPRTRFSTGSTPDTKQVTSPSPRPVQPSNAPPPPPPPPPPPPPP--PP 364
Query: 465 SSLGMAKGVSPP 430
L A PP
Sbjct: 365 PKLNTAPKPPPP 376
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 182 TPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVS 39
+PP+D LY + + D +L A++ S E+YR + S V+
Sbjct: 753 SPPWDVTLYQKLEIGVSDVARSLTPANVIGHGWSGEVYRASMPSSGVT 800
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 380 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 291
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,120,806
Number of Sequences: 37544
Number of extensions: 420115
Number of successful extensions: 1389
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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