Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14f08
(665 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase prot... 33 0.92
BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongatio... 33 0.92
BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein. 33 0.92
AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription ... 33 0.92
AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein. 33 0.92
AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongatio... 33 0.92
AF259792-1|AAG36928.1| 1486|Homo sapiens p250R protein. 33 1.2
AL591545-3|CAI40666.1| 1736|Homo sapiens RP11-419L10.1 protein. 31 2.8
AL591545-2|CAI40664.1| 1485|Homo sapiens RP11-419L10.1 protein. 31 2.8
AL355297-2|CAH71534.1| 1736|Homo sapiens RP11-419L10.1 protein. 31 2.8
AL162578-3|CAI40014.1| 1736|Homo sapiens RP11-419L10.1 protein. 31 2.8
AL049820-4|CAI42308.1| 1736|Homo sapiens RP11-419L10.1 protein. 31 2.8
AL049820-2|CAI42305.1| 1485|Homo sapiens RP11-419L10.1 protein. 31 2.8
AF521671-1|AAN03447.1| 2165|Homo sapiens SWI/SNF chromatin remod... 31 2.8
AF468300-1|AAL76077.1| 1740|Homo sapiens BRG1-binding protein EL... 31 2.8
AF253515-1|AAN70985.1| 1957|Homo sapiens BAF250b subunit protein. 31 2.8
AB033061-1|BAA86549.1| 1485|Homo sapiens KIAA1235 protein protein. 31 2.8
CR456522-1|CAG30408.1| 931|Homo sapiens MKL1 protein. 31 3.7
BC115039-1|AAI15040.1| 798|Homo sapiens MKL1 protein protein. 31 3.7
AK096003-1|BAC04669.1| 620|Homo sapiens protein ( Homo sapiens ... 31 4.9
AJ316534-1|CAC48387.1| 1231|Homo sapiens serine/threonine protei... 31 4.9
AF390018-1|AAK91995.1| 1243|Homo sapiens putative protein kinase... 31 4.9
M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein. 30 6.5
M74027-1|AAA59875.1| 573|Homo sapiens mucin protein. 30 6.5
L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein. 30 6.5
>U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase protein.
Length = 2000
Score = 33.1 bits (72), Expect = 0.92
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = -3
Query: 651 IKPPSPAISXTSTRSSNPRFHTPTTPDLTS----ISINPLTPY*KEFAPGLKPPLSSE 490
+ P A S S+R+S+P +PTTP+ ++ + P TP E G++ PL E
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 1574
>BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongation
regulator 1 protein.
Length = 1077
Score = 33.1 bits (72), Expect = 0.92
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPG-----LKPPLSSEAPSA 478
P+PA+S TST SS P T TT TS++ TP ++ P P +S P+
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAP 324
Query: 477 YLTP 466
TP
Sbjct: 325 TATP 328
>BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein.
Length = 661
Score = 33.1 bits (72), Expect = 0.92
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = -3
Query: 651 IKPPSPAISXTSTRSSNPRFHTPTTPDLTS----ISINPLTPY*KEFAPGLKPPLSSE 490
+ P A S S+R+S+P +PTTP+ ++ + P TP E G++ PL E
Sbjct: 178 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 235
>AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription
factor CA150 protein.
Length = 1098
Score = 33.1 bits (72), Expect = 0.92
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPG-----LKPPLSSEAPSA 478
P+PA+S TST SS P T TT TS++ TP ++ P P +S P+
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAR 324
Query: 477 YLTP 466
TP
Sbjct: 325 TATP 328
>AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein.
Length = 1944
Score = 33.1 bits (72), Expect = 0.92
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = -3
Query: 651 IKPPSPAISXTSTRSSNPRFHTPTTPDLTS----ISINPLTPY*KEFAPGLKPPLSSE 490
+ P A S S+R+S+P +PTTP+ ++ + P TP E G++ PL E
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 1574
>AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongation
regulator 1 variant protein.
Length = 1081
Score = 33.1 bits (72), Expect = 0.92
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPG-----LKPPLSSEAPSA 478
P+PA+S TST SS P T TT TS++ TP ++ P P +S P+
Sbjct: 270 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAP 328
Query: 477 YLTP 466
TP
Sbjct: 329 TATP 332
>AF259792-1|AAG36928.1| 1486|Homo sapiens p250R protein.
Length = 1486
Score = 32.7 bits (71), Expect = 1.2
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEF-----APG-LKPPLSSEAPS 481
P P + T P+ P+ + S+ P TP PG LKPP+ + P
Sbjct: 399 PPPEVFSTGDTKKQPKLQPPSPANSGSLQ-GPQTPQSTGSNSMAEVPGDLKPPIPASTPH 457
Query: 480 AYLTPSSLGMAKGVS--PPYFQVNDESQASR 394
+TP G + +S P+ V+D S R
Sbjct: 458 GQMTPMQGGRSSTISVHDPFSDVSDSSFPKR 488
>AL591545-3|CAI40666.1| 1736|Homo sapiens RP11-419L10.1 protein.
Length = 1736
Score = 31.5 bits (68), Expect = 2.8
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEF-----APG-LKPPLSSEAPS 481
P P + T P+ P+ + S+ P TP PG LKPP + P
Sbjct: 649 PPPEVFSTGDTKKQPKLQPPSPANSGSLQ-GPQTPQSTGSNSMAEVPGDLKPPTPASTPH 707
Query: 480 AYLTPSSLGMAKGVS--PPYFQVNDESQASR 394
+TP G + +S P+ V+D S R
Sbjct: 708 GQMTPMQGGRSSTISVHDPFSDVSDSSFPKR 738
>AL591545-2|CAI40664.1| 1485|Homo sapiens RP11-419L10.1 protein.
Length = 1485
Score = 31.5 bits (68), Expect = 2.8
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEF-----APG-LKPPLSSEAPS 481
P P + T P+ P+ + S+ P TP PG LKPP + P
Sbjct: 398 PPPEVFSTGDTKKQPKLQPPSPANSGSLQ-GPQTPQSTGSNSMAEVPGDLKPPTPASTPH 456
Query: 480 AYLTPSSLGMAKGVS--PPYFQVNDESQASR 394
+TP G + +S P+ V+D S R
Sbjct: 457 GQMTPMQGGRSSTISVHDPFSDVSDSSFPKR 487
>AL355297-2|CAH71534.1| 1736|Homo sapiens RP11-419L10.1 protein.
Length = 1736
Score = 31.5 bits (68), Expect = 2.8
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEF-----APG-LKPPLSSEAPS 481
P P + T P+ P+ + S+ P TP PG LKPP + P
Sbjct: 649 PPPEVFSTGDTKKQPKLQPPSPANSGSLQ-GPQTPQSTGSNSMAEVPGDLKPPTPASTPH 707
Query: 480 AYLTPSSLGMAKGVS--PPYFQVNDESQASR 394
+TP G + +S P+ V+D S R
Sbjct: 708 GQMTPMQGGRSSTISVHDPFSDVSDSSFPKR 738
>AL162578-3|CAI40014.1| 1736|Homo sapiens RP11-419L10.1 protein.
Length = 1736
Score = 31.5 bits (68), Expect = 2.8
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEF-----APG-LKPPLSSEAPS 481
P P + T P+ P+ + S+ P TP PG LKPP + P
Sbjct: 649 PPPEVFSTGDTKKQPKLQPPSPANSGSLQ-GPQTPQSTGSNSMAEVPGDLKPPTPASTPH 707
Query: 480 AYLTPSSLGMAKGVS--PPYFQVNDESQASR 394
+TP G + +S P+ V+D S R
Sbjct: 708 GQMTPMQGGRSSTISVHDPFSDVSDSSFPKR 738
>AL049820-4|CAI42308.1| 1736|Homo sapiens RP11-419L10.1 protein.
Length = 1736
Score = 31.5 bits (68), Expect = 2.8
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEF-----APG-LKPPLSSEAPS 481
P P + T P+ P+ + S+ P TP PG LKPP + P
Sbjct: 649 PPPEVFSTGDTKKQPKLQPPSPANSGSLQ-GPQTPQSTGSNSMAEVPGDLKPPTPASTPH 707
Query: 480 AYLTPSSLGMAKGVS--PPYFQVNDESQASR 394
+TP G + +S P+ V+D S R
Sbjct: 708 GQMTPMQGGRSSTISVHDPFSDVSDSSFPKR 738
>AL049820-2|CAI42305.1| 1485|Homo sapiens RP11-419L10.1 protein.
Length = 1485
Score = 31.5 bits (68), Expect = 2.8
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEF-----APG-LKPPLSSEAPS 481
P P + T P+ P+ + S+ P TP PG LKPP + P
Sbjct: 398 PPPEVFSTGDTKKQPKLQPPSPANSGSLQ-GPQTPQSTGSNSMAEVPGDLKPPTPASTPH 456
Query: 480 AYLTPSSLGMAKGVS--PPYFQVNDESQASR 394
+TP G + +S P+ V+D S R
Sbjct: 457 GQMTPMQGGRSSTISVHDPFSDVSDSSFPKR 487
>AF521671-1|AAN03447.1| 2165|Homo sapiens SWI/SNF chromatin remodeling
complex subunit OSA2 protein.
Length = 2165
Score = 31.5 bits (68), Expect = 2.8
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEF-----APG-LKPPLSSEAPS 481
P P + T P+ P+ + S+ P TP PG LKPP + P
Sbjct: 1078 PPPEVFSTGDTKKQPKLQPPSPANSGSLQ-GPQTPQSTGSNSMAEVPGDLKPPTPASTPH 1136
Query: 480 AYLTPSSLGMAKGVS--PPYFQVNDESQASR 394
+TP G + +S P+ V+D S R
Sbjct: 1137 GQMTPMQGGRSSTISVHDPFSDVSDSSFPKR 1167
>AF468300-1|AAL76077.1| 1740|Homo sapiens BRG1-binding protein
ELD/OSA1 protein.
Length = 1740
Score = 31.5 bits (68), Expect = 2.8
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEF-----APG-LKPPLSSEAPS 481
P P + T P+ P+ + S+ P TP PG LKPP + P
Sbjct: 653 PPPEVFSTGDTKKQPKLQPPSPANSGSLQ-GPQTPQSTGSNSMAEVPGDLKPPTPASTPH 711
Query: 480 AYLTPSSLGMAKGVS--PPYFQVNDESQASR 394
+TP G + +S P+ V+D S R
Sbjct: 712 GQMTPMQGGRSSTISVHDPFSDVSDSSFPKR 742
>AF253515-1|AAN70985.1| 1957|Homo sapiens BAF250b subunit protein.
Length = 1957
Score = 31.5 bits (68), Expect = 2.8
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEF-----APG-LKPPLSSEAPS 481
P P + T P+ P+ + S+ P TP PG LKPP + P
Sbjct: 870 PPPEVFSTGDTKKQPKLQPPSPANSGSLQ-GPQTPQSTGSNSMAEVPGDLKPPTPASTPH 928
Query: 480 AYLTPSSLGMAKGVS--PPYFQVNDESQASR 394
+TP G + +S P+ V+D S R
Sbjct: 929 GQMTPMQGGRSSTISVHDPFSDVSDSSFPKR 959
>AB033061-1|BAA86549.1| 1485|Homo sapiens KIAA1235 protein protein.
Length = 1485
Score = 31.5 bits (68), Expect = 2.8
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEF-----APG-LKPPLSSEAPS 481
P P + T P+ P+ + S+ P TP PG LKPP + P
Sbjct: 398 PPPEVFSTGDTKKQPKLQPPSPANSGSLQ-GPQTPQSTGSNSMAEVPGDLKPPTPASTPH 456
Query: 480 AYLTPSSLGMAKGVS--PPYFQVNDESQASR 394
+TP G + +S P+ V+D S R
Sbjct: 457 GQMTPMQGGRSSTISVHDPFSDVSDSSFPKR 487
>CR456522-1|CAG30408.1| 931|Homo sapiens MKL1 protein.
Length = 931
Score = 31.1 bits (67), Expect = 3.7
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -3
Query: 603 NPRFHTPTTPDLTSISINPLTPY*KEFAPGLKP-PLSSEAPSAYLTPSSLGMAKGVSPP 430
NP P T + ++ P P L+P P AP L P G+ KGV+PP
Sbjct: 598 NPSLAAPATNHIDPCAVAPGPPSVVVKQEALQPEPEPVPAPQLLLGPQGPGLIKGVAPP 656
>BC115039-1|AAI15040.1| 798|Homo sapiens MKL1 protein protein.
Length = 798
Score = 31.1 bits (67), Expect = 3.7
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -3
Query: 603 NPRFHTPTTPDLTSISINPLTPY*KEFAPGLKP-PLSSEAPSAYLTPSSLGMAKGVSPP 430
NP P T + ++ P P L+P P AP L P G+ KGV+PP
Sbjct: 598 NPSLAAPATNHIDPCAVAPGPPSVVVKQEALQPEPEPVPAPQLLLGPQGPGLIKGVAPP 656
>AK096003-1|BAC04669.1| 620|Homo sapiens protein ( Homo sapiens
cDNA FLJ38684 fis, clone KIDNE2000801. ).
Length = 620
Score = 30.7 bits (66), Expect = 4.9
Identities = 26/78 (33%), Positives = 33/78 (42%)
Frame = -3
Query: 663 SPLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP 484
SP C PSP +S SSNP H PT+ L S P P P P +S P
Sbjct: 288 SPPCHPSPSPFSPISSQVSSNPSPH-PTSSPLPFSSSTPEFPVPLSQCPWSSLPTTS-PP 345
Query: 483 SAYLTPSSLGMAKGVSPP 430
+ T S + ++ PP
Sbjct: 346 TFSPTCSQVTLSSPFFPP 363
>AJ316534-1|CAC48387.1| 1231|Homo sapiens serine/threonine protein
kinase protein.
Length = 1231
Score = 30.7 bits (66), Expect = 4.9
Identities = 26/78 (33%), Positives = 33/78 (42%)
Frame = -3
Query: 663 SPLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP 484
SP C PSP +S SSNP H PT+ L S P P P P +S P
Sbjct: 821 SPPCHPSPSPFSPISSQVSSNPSPH-PTSSPLPFSSSTPEFPVPLSQCPWSSLPTTS-PP 878
Query: 483 SAYLTPSSLGMAKGVSPP 430
+ T S + ++ PP
Sbjct: 879 TFSPTCSQVTLSSPFFPP 896
>AF390018-1|AAK91995.1| 1243|Homo sapiens putative protein kinase WNK4
protein.
Length = 1243
Score = 30.7 bits (66), Expect = 4.9
Identities = 26/78 (33%), Positives = 33/78 (42%)
Frame = -3
Query: 663 SPLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP 484
SP C PSP +S SSNP H PT+ L S P P P P +S P
Sbjct: 833 SPPCHPSPSPFSPISSQVSSNPSPH-PTSSPLPFSSSTPEFPVPLSQCPWSSLPTTS-PP 890
Query: 483 SAYLTPSSLGMAKGVSPP 430
+ T S + ++ PP
Sbjct: 891 TFSPTCSQVTLSSPFFPP 908
>M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.
Length = 1270
Score = 30.3 bits (65), Expect = 6.5
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = -3
Query: 642 PSPAISXTST----RSSNPRFHTPTTPDLTSISINPLT-PY*KEFAPGLKPPLSSEAPSA 478
PSP + T+T + +P TP TP ++ ++ P T P PP ++ +P
Sbjct: 898 PSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPT 957
Query: 477 YLTPSSLGMAKGVSPP 430
TPS + PP
Sbjct: 958 TTTPSPPTITTTTPPP 973
>M74027-1|AAA59875.1| 573|Homo sapiens mucin protein.
Length = 573
Score = 30.3 bits (65), Expect = 6.5
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = -3
Query: 642 PSPAISXTST----RSSNPRFHTPTTPDLTSISINPLT-PY*KEFAPGLKPPLSSEAPSA 478
PSP + T+T + +P TP TP ++ ++ P T P PP ++ +P
Sbjct: 181 PSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPT 240
Query: 477 YLTPSSLGMAKGVSPP 430
TPS + PP
Sbjct: 241 TTTPSPPTITTTTPPP 256
>L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.
Length = 5179
Score = 30.3 bits (65), Expect = 6.5
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = -3
Query: 642 PSPAISXTST----RSSNPRFHTPTTPDLTSISINPLT-PY*KEFAPGLKPPLSSEAPSA 478
PSP + T+T + +P TP TP ++ ++ P T P PP ++ +P
Sbjct: 1523 PSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPT 1582
Query: 477 YLTPSSLGMAKGVSPP 430
TPS + PP
Sbjct: 1583 TTTPSPPTITTTTPPP 1598
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,858,142
Number of Sequences: 237096
Number of extensions: 2141122
Number of successful extensions: 6185
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 5741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6179
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -