Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f08
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    32   0.32 
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    31   0.97 
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    31   0.97 
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    31   0.97 
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    31   0.97 
U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z70213-6|CAA94176.1|  167|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical ...    28   5.2  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   6.8  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   6.8  
AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    27   9.1  
U97592-5|AAB52873.1|  597|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ...    27   9.1  
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ...    27   9.1  
AF039718-5|AAP68905.1|  760|Caenorhabditis elegans Prion-like-(q...    27   9.1  
AF039718-4|AAP68906.2|  696|Caenorhabditis elegans Prion-like-(q...    27   9.1  

>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -3

Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTP--Y*KEFAPGLKPPLSSEAPSAYLT 469
           P+P  + T+T  +NP   TPTT  + +I  +P  P          + P  S+ AP+A + 
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVN 547

Query: 468 PSSLGMAKGVSP 433
           P+S   A  V P
Sbjct: 548 PTSPTTAPTVPP 559


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 659 PYASSHPPLRSRXHQPDHQIPDS 591
           P +S HPPL S  H  +H  PD+
Sbjct: 66  PTSSHHPPLNSSSHHSNHNYPDT 88


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -3

Query: 645  PPSPAISXTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 475
            P SP+ S TS + S     ++PT+P    TS S +P +P     +P   P   S +PS+ 
Sbjct: 1607 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1666

Query: 474  LTPSSLGMAKGVSPPY 427
                S       SP Y
Sbjct: 1667 SYSPSSPRYSPTSPTY 1682


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = -3

Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPS 463
           P+P  + T+T  +NP   TPTT   TS   N ++P+       +     + AP    +P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548

Query: 462 SLGMAKGVSPP 430
           +       S P
Sbjct: 549 TTPTHTTASQP 559


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -3

Query: 645  PPSPAISXTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 475
            P SP+ S TS + S     ++PT+P    TS S +P +P     +P   P   S +PS+ 
Sbjct: 1614 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1673

Query: 474  LTPSSLGMAKGVSPPY 427
                S       SP Y
Sbjct: 1674 SYSPSSPRYSPTSPTY 1689


>U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical
           protein F59A3.2b protein.
          Length = 687

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = -3

Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SAYLTP 466
           P+P I     R   PR     TP L  + I+P+     +F P + PP    +P  A   P
Sbjct: 514 PTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNP 570

Query: 465 SSLGMAKGVSPPYFQVNDESQASRLISR 382
           ++L      S P   V ++      ++R
Sbjct: 571 TNLYPTPPSSLPNTYVPNQESFDESVNR 598


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical
           protein F59A3.2a protein.
          Length = 975

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = -3

Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SAYLTP 466
           P+P I     R   PR     TP L  + I+P+     +F P + PP    +P  A   P
Sbjct: 514 PTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNP 570

Query: 465 SSLGMAKGVSPPYFQVNDESQASRLISR 382
           ++L      S P   V ++      ++R
Sbjct: 571 TNLYPTPPSSLPNTYVPNQESFDESVNR 598


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
           protein Y53C10A.10 protein.
          Length = 1582

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = -3

Query: 645 PPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAP-GLKPPLSSEAPSAYLT 469
           P S  I+ TS+ S+ P   +  T   T    +  +    E     ++   SS +PS + T
Sbjct: 695 PDSTIITSTSSTSTRPGTSSTATDSPTMDDTSKTSTVTSEGTTLSIESTESSASPSDFTT 754

Query: 468 PSSLGMAKGVSPPYFQVNDESQAS 397
           P  +G    VS    Q +  S +S
Sbjct: 755 PDFIGFTSSVSRTSEQYSSSSPSS 778


>Z70213-6|CAA94176.1|  167|Caenorhabditis elegans Hypothetical
           protein ZK930.7 protein.
          Length = 167

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 648 KPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLT 541
           KPP+P+     T   N   + P++P  T  S  PLT
Sbjct: 101 KPPAPSARTPPTIYENLAINAPSSPSATDASSVPLT 136


>AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical
           protein F49F1.1 protein.
          Length = 265

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = -3

Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPS 481
           P+   S ++  +  P   T  TP+LT++++ P+T   K     + P  +++ P+
Sbjct: 160 PATCGSCSNGTTGVPLVLTTLTPELTTVTVEPITSTLKPTTTTITPTTTTKLPT 213


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 504  PLSSEAPSAYLTPSSLGMAKGVSPP 430
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 504  PLSSEAPSAYLTPSSLGMAKGVSPP 430
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 651 IKPPSPAISXTSTRSSNPRFHTPTTPD-LTSISINPLTP 538
           +   SPAI  T+T +++P+  T  TP+ +T++    + P
Sbjct: 266 VSSDSPAIESTTTTTASPKTSTTLTPEPITTVPAKDVKP 304


>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -1

Query: 209 VFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSS 36
           ++D +C F+   +  + YD I T  +      LS S  AS+ S    R L+ +  V S
Sbjct: 235 IYDETCVFNYDNYCYIPYDQINTSKQGQSICELSGSNLASIRSGNENRFLMSTVSVFS 292


>U97592-5|AAB52873.1|  597|Caenorhabditis elegans Hypothetical
           protein C14A11.6 protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -3

Query: 630 ISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGM 451
           +S +STR+++    + +TP  T+ +I P  P   E +  +K   + E   A   P+   M
Sbjct: 528 LSHSSTRTADTIAASTSTPPSTTSNITPSRPTTSEQSNTIKRKTAFEKEDA--PPAKRSM 585

Query: 450 AKGVSPPYF 424
           A      YF
Sbjct: 586 ATSTDDAYF 594


>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
           protein 25, isoformb protein.
          Length = 1130

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 486 EPLMTTEALTPARIPSNTAS 545
           EP++++E L P R+PS T S
Sbjct: 877 EPILSSEVLQPTRLPSATTS 896


>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
            protein 25, isoforma protein.
          Length = 1237

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 486  EPLMTTEALTPARIPSNTAS 545
            EP++++E L P R+PS T S
Sbjct: 984  EPILSSEVLQPTRLPSATTS 1003


>AF039718-5|AAP68905.1|  760|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform a protein.
          Length = 760

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 663 SPLCIKPPSPAISXTSTRSS--NPRFHTPTTPDL 568
           SP  ++ P+ + S T  ++S  NP++H PT  DL
Sbjct: 580 SPDAVETPTNSGSSTPPQTSVRNPKYHVPTPTDL 613


>AF039718-4|AAP68906.2|  696|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform b protein.
          Length = 696

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 663 SPLCIKPPSPAISXTSTRSS--NPRFHTPTTPDL 568
           SP  ++ P+ + S T  ++S  NP++H PT  DL
Sbjct: 482 SPDAVETPTNSGSSTPPQTSVRNPKYHVPTPTDL 515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,859,819
Number of Sequences: 27780
Number of extensions: 305421
Number of successful extensions: 1118
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)