Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14f01
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...   201   5e-52
Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical pr...    31   0.88 
Z68108-17|CAB60298.3| 1898|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z50740-4|CAB60281.3| 1898|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U41555-9|AAB37034.1|  646|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical pr...    29   4.7  
D30651-1|BAA21637.1|  646|Caenorhabditis elegans flavoprotein su...    29   4.7  
AF044576-1|AAC38963.1| 1898|Caenorhabditis elegans phospholipase...    29   4.7  

>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score =  201 bits (490), Expect = 5e-52
 Identities = 96/147 (65%), Positives = 120/147 (81%), Gaps = 1/147 (0%)
 Frame = -2

Query: 754 AADKILIDR-NILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKYERESNYHLLESV 578
           AAD+IL+ R + L+IPD+Y+N+GGVTVS+FEWLKNLNHVSYGRLTFKY+ E+N  LL SV
Sbjct: 392 AADRILLARGDCLIIPDMYVNSGGVTVSYFEWLKNLNHVSYGRLTFKYDEEANKMLLASV 451

Query: 577 QESLERRFGRVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMRFNL 398
           QESL +    VG   PV P+ +F  +I+GASEKDIVHSGL+YTM+RS  AI++TA ++NL
Sbjct: 452 QESLSKA---VGKDCPVEPNAAFAAKIAGASEKDIVHSGLEYTMQRSGEAIIRTAHKYNL 508

Query: 397 GLDLRTAAYANSIEKIFTTYADAGLAF 317
           GLD+RTAAYANSIEK++ TY  AG  F
Sbjct: 509 GLDIRTAAYANSIEKVYNTYRTAGFTF 535


>Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical
           protein F26D2.4 protein.
          Length = 332

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 202 TVRSRHEIKPLG*FYSYCLHFIHFDLIPVHVNFTY 98
           T   RH       FY+Y LHF+    IP+H+  TY
Sbjct: 2   TCTYRHSFLESDEFYAYSLHFLSIFQIPLHIFGTY 36


>Z68108-17|CAB60298.3| 1898|Caenorhabditis elegans Hypothetical
            protein F31B12.1a protein.
          Length = 1898

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 187  VVISLYCKMKEINIGLNLRSTLEFLRKYYTDNTLKLVFSK*IIRKLDRHRHTW*ISFRWS 366
            V++   C   ++N G ++   L   RK   D T K   ++   R L ++ + W    RW 
Sbjct: 1786 VLVEETCDDPKLNQGQSMLQALSLARKRSNDLTPKYPNNRTTSRVLGQNENVWKAQSRWK 1845

Query: 367  SHTR 378
            S  R
Sbjct: 1846 SMGR 1849


>Z50740-4|CAB60281.3| 1898|Caenorhabditis elegans Hypothetical protein
            F31B12.1a protein.
          Length = 1898

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 187  VVISLYCKMKEINIGLNLRSTLEFLRKYYTDNTLKLVFSK*IIRKLDRHRHTW*ISFRWS 366
            V++   C   ++N G ++   L   RK   D T K   ++   R L ++ + W    RW 
Sbjct: 1786 VLVEETCDDPKLNQGQSMLQALSLARKRSNDLTPKYPNNRTTSRVLGQNENVWKAQSRWK 1845

Query: 367  SHTR 378
            S  R
Sbjct: 1846 SMGR 1849


>U41555-9|AAB37034.1|  646|Caenorhabditis elegans Hypothetical
           protein C03G5.1 protein.
          Length = 646

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 523 PSESFQKRISGASEKDIVHSGLDYTME 443
           P+E  Q+R+ G SE  ++ +G+D T E
Sbjct: 353 PAEQLQQRLPGISETAMIFAGVDVTKE 379


>U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical
           protein F53A9.7 protein.
          Length = 85

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 452 HHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKDIHH 342
           HHG +   HHE+SH  +        +  E H +  HH
Sbjct: 42  HHGHVDTHHHEESHHGEHHGGHHGVQHYESHHESHHH 78


>D30651-1|BAA21637.1|  646|Caenorhabditis elegans flavoprotein
           subunit of complex II protein.
          Length = 646

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 523 PSESFQKRISGASEKDIVHSGLDYTME 443
           P+E  Q+R+ G SE  ++ +G+D T E
Sbjct: 353 PAEQLQQRLPGISETAMIFAGVDVTKE 379


>AF044576-1|AAC38963.1| 1898|Caenorhabditis elegans phospholipase C
            PLC210 protein.
          Length = 1898

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 187  VVISLYCKMKEINIGLNLRSTLEFLRKYYTDNTLKLVFSK*IIRKLDRHRHTW*ISFRWS 366
            V++   C   ++N G ++   L   RK   D T K   ++   R L ++ + W    RW 
Sbjct: 1786 VLVEETCDDPKLNQGQSMLQALSLARKRSNDLTPKYPNNRTTSRVLGQNENVWKAQSRWK 1845

Query: 367  SHTR 378
            S  R
Sbjct: 1846 SMGR 1849


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,407,072
Number of Sequences: 27780
Number of extensions: 353545
Number of successful extensions: 982
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)