Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14e16
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 380 e-106
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 379 e-106
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 378 e-106
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.54
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 28 1.6
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 2.2
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.8
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 3.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.8
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 8.7
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 380 bits (934), Expect = e-106
Identities = 171/246 (69%), Positives = 205/246 (83%)
Frame = -3
Query: 747 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRXKYALTGNEVLKIVKQRLIKVD 568
AP W+LDKL G YAP+PS GPHK RECLPL++FLRNR KYAL G EV I+ QRLIKVD
Sbjct: 14 APHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVD 73
Query: 567 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 388
GKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G
Sbjct: 74 GKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGA 133
Query: 387 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 208
K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVG
Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVG 193
Query: 207 TIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERD 28
TIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD
Sbjct: 194 TIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERD 253
Query: 27 KRIAAK 10
+R A K
Sbjct: 254 RRRALK 259
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 379 bits (932), Expect = e-106
Identities = 170/246 (69%), Positives = 205/246 (83%)
Frame = -3
Query: 747 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRXKYALTGNEVLKIVKQRLIKVD 568
AP W+LDKL G YAP+PS GPHK RECLPL++FLRNR KYAL G EV I+ QRLI+VD
Sbjct: 14 APHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVD 73
Query: 567 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 388
GKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G
Sbjct: 74 GKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGA 133
Query: 387 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 208
K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVG
Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVG 193
Query: 207 TIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERD 28
TIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD
Sbjct: 194 TIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERD 253
Query: 27 KRIAAK 10
+R A K
Sbjct: 254 RRRALK 259
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 378 bits (931), Expect = e-106
Identities = 170/246 (69%), Positives = 205/246 (83%)
Frame = -3
Query: 747 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRXKYALTGNEVLKIVKQRLIKVD 568
AP W+LDKL G YAP+PS GPHK RECLPL++FLRNR KYAL G EV I+ QRLIKVD
Sbjct: 14 APHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVD 73
Query: 567 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 388
GKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G
Sbjct: 74 GKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGA 133
Query: 387 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 208
K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVG
Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVG 193
Query: 207 TIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERD 28
TIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD
Sbjct: 194 TIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERD 253
Query: 27 KRIAAK 10
+R A K
Sbjct: 254 RRRALK 259
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.54
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +1
Query: 79 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 204
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 532 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILXTIPQENHQGQALAQLVGT 687
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = -3
Query: 591 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 412
K++ K+ +R + +P + +I + F + G + +I K LC
Sbjct: 13 KRKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCS 72
Query: 411 VK-RVATGPKNVPYLVTHDGR 352
V T PKN Y+V GR
Sbjct: 73 NPIDVHTDPKNTEYIVASGGR 93
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 325 QSQRFHPVRHCNYED 281
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 267 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 163
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -3
Query: 525 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 349
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 348 IR 343
++
Sbjct: 1778 LK 1779
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 430 SLLRGDTVDCESALNIID*TKQ 495
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,131
Number of Sequences: 5004
Number of extensions: 69757
Number of successful extensions: 208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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