Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14e14
         (406 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O10359 Cluster: Uncharacterized 9.3 kDa protein; n=12; ...    75   4e-13
UniRef50_A7FQ91 Cluster: NlpC/P60 family protein; n=4; Clostridi...    34   1.2  
UniRef50_Q8JMA7 Cluster: Putative uncharacterized protein; n=2; ...    33   1.6  
UniRef50_P41674 Cluster: Uncharacterized 6.7 kDa protein in HE65...    33   1.6  
UniRef50_A5FBS1 Cluster: Putative uncharacterized protein precur...    33   2.9  
UniRef50_A5Z4U2 Cluster: Putative uncharacterized protein; n=1; ...    31   6.6  
UniRef50_A7QM31 Cluster: Chromosome undetermined scaffold_123, w...    31   6.6  
UniRef50_Q6BQP2 Cluster: Debaryomyces hansenii chromosome E of s...    31   8.7  

>UniRef50_O10359 Cluster: Uncharacterized 9.3 kDa protein; n=12;
           Nucleopolyhedrovirus|Rep: Uncharacterized 9.3 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 82

 Score = 75.4 bits (177), Expect = 4e-13
 Identities = 37/66 (56%), Positives = 47/66 (71%)
 Frame = -3

Query: 353 FLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECXQLKQKXDKKIAQRIL 174
           F KLGYLFRA+ CLDIAL NLK LR++  I +VA ML KK  +C  L++K + +I  R L
Sbjct: 16  FAKLGYLFRARVCLDIALANLKQLRQRVAIPQVANMLAKKEAQCCLLREKLNTQIDNRSL 75

Query: 173 IKIYTI 156
           IK+Y I
Sbjct: 76  IKLYKI 81


>UniRef50_A7FQ91 Cluster: NlpC/P60 family protein; n=4; Clostridium
           botulinum|Rep: NlpC/P60 family protein - Clostridium
           botulinum (strain ATCC 19397 / Type A)
          Length = 367

 Score = 33.9 bits (74), Expect = 1.2
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = -3

Query: 290 KLLRRKTNIKEVAVMLNKKTTECXQLKQKXDKKIA 186
           +L  +K  IKE  V L+KK+TE  QLK + +KK++
Sbjct: 139 ELKTKKEEIKEKKVALDKKSTEIVQLKAENEKKLS 173


>UniRef50_Q8JMA7 Cluster: Putative uncharacterized protein; n=2;
           Nucleopolyhedrovirus|Rep: Putative uncharacterized
           protein - Mamestra configurata NPV-B
          Length = 81

 Score = 33.5 bits (73), Expect = 1.6
 Identities = 20/71 (28%), Positives = 39/71 (54%)
 Frame = -3

Query: 368 DLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECXQLKQKXDKKI 189
           +LA  F +L +  +A  C ++A   L  ++++    +V +M + KT EC   +QK +K+ 
Sbjct: 9   ELAAQFEQLHFYDKAIECNNLATLFLNRIKQRKLNGDVLIMCDLKTLECATNRQKLNKR- 67

Query: 188 AQRILIKIYTI 156
              +L+K Y +
Sbjct: 68  KDNLLLKKYIL 78


>UniRef50_P41674 Cluster: Uncharacterized 6.7 kDa protein in
          HE65-PK2 intergenic region; n=3;
          Nucleopolyhedrovirus|Rep: Uncharacterized 6.7 kDa
          protein in HE65-PK2 intergenic region - Autographa
          californica nuclear polyhedrosis virus (AcMNPV)
          Length = 58

 Score = 33.5 bits (73), Expect = 1.6
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -3

Query: 47 MMSSSQIIVCNKINI 3
          MMSSSQIIVCNKINI
Sbjct: 1  MMSSSQIIVCNKINI 15


>UniRef50_A5FBS1 Cluster: Putative uncharacterized protein
           precursor; n=1; Flavobacterium johnsoniae UW101|Rep:
           Putative uncharacterized protein precursor -
           Flavobacterium johnsoniae UW101
          Length = 532

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -3

Query: 368 DLAHTFLKLGYLFRAKTCLDIALDNLKLL---RRKTNIKEVAVMLNKKTTECXQLKQKXD 198
           +LA+   K+GYL +A   ++IA+D+        RK  I  +  ++ K   +   +K K D
Sbjct: 269 NLANELFKMGYLDKANEYINIAMDDATFYNARHRKIEISSILPIIEK--AQLNNVKDKND 326

Query: 197 KKIAQRILIKIYTI 156
           K     IL+ I T+
Sbjct: 327 KLEKIIILLTILTL 340


>UniRef50_A5Z4U2 Cluster: Putative uncharacterized protein; n=1;
           Eubacterium ventriosum ATCC 27560|Rep: Putative
           uncharacterized protein - Eubacterium ventriosum ATCC
           27560
          Length = 196

 Score = 31.5 bits (68), Expect = 6.6
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 178 IRCAIFLSIFCFNCXHSVVFLFSMTATSFMLVFRRNSFKLSKAISRQVL 324
           I   I + IFC+NC  +++FL S   + F+  FRR++   +  +   +L
Sbjct: 84  ISLMIIIHIFCYNCC-NLIFLLSWCHSPFIYHFRRDALNQNPLLKISLL 131


>UniRef50_A7QM31 Cluster: Chromosome undetermined scaffold_123,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome undetermined scaffold_123, whole genome
           shotgun sequence - Vitis vinifera (Grape)
          Length = 817

 Score = 31.5 bits (68), Expect = 6.6
 Identities = 16/71 (22%), Positives = 33/71 (46%)
 Frame = +1

Query: 184 CAIFLSIFCFNCXHSVVFLFSMTATSFMLVFRRNSFKLSKAISRQVLALNK*PNFKKVXA 363
           C   L  FCF+  HS+V ++ +  +   ++FR    K+      Q++  N  P    +  
Sbjct: 250 CPCVLPKFCFSYPHSLVHIYPICMSMGTVLFRLILSKIFLPHFVQIIRFNSFPFMLIIRC 309

Query: 364 KSPRFYNVLKC 396
           +S   + +++C
Sbjct: 310 RSKEKFCIIRC 320


>UniRef50_Q6BQP2 Cluster: Debaryomyces hansenii chromosome E of
           strain CBS767 of Debaryomyces hansenii; n=1;
           Debaryomyces hansenii|Rep: Debaryomyces hansenii
           chromosome E of strain CBS767 of Debaryomyces hansenii -
           Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
          Length = 788

 Score = 31.1 bits (67), Expect = 8.7
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = -3

Query: 368 DLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECXQLK 210
           +LA T +K G   +AKTC D AL     L  + ++++ A ++N+KT +   +K
Sbjct: 539 NLALTLIKTGNYKQAKTCCDEALQ----LVTEDDLQDYAYLINEKTIKSWYIK 587


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 295,132,235
Number of Sequences: 1657284
Number of extensions: 4125737
Number of successful extensions: 8355
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8341
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)