Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14e14
         (406 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    24   0.65 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   2.0  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.1  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    20   8.0  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    20   8.0  

>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 23.8 bits (49), Expect = 0.65
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 14  YYILLFVMMTSYXKLVLHVXFXW*NKFK 97
           YY+LLFV+   Y   + +  + W  +++
Sbjct: 100 YYLLLFVINVLYVLTLCYAVYYWRQQYE 127



 Score = 20.2 bits (40), Expect = 8.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 205 FCFNCXHSVVFLFSMT 252
           F +NC HS + L  ++
Sbjct: 144 FLYNCFHSTLLLMILS 159


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 5/27 (18%), Positives = 17/27 (62%)
 Frame = +2

Query: 2   ICLFYYILLFVMMTSYXKLVLHVXFXW 82
           +C++Y+   F++ T +  L++ + + +
Sbjct: 236 LCIYYFYYAFILFTVHLLLLVCIYYFY 262



 Score = 20.6 bits (41), Expect = 6.1
 Identities = 5/25 (20%), Positives = 15/25 (60%)
 Frame = +2

Query: 2   ICLFYYILLFVMMTSYXKLVLHVXF 76
           +C++Y+   F++ T +   +L + +
Sbjct: 111 LCVYYFYYAFIIFTVHLLFLLCIYY 135



 Score = 20.2 bits (40), Expect = 8.0
 Identities = 5/21 (23%), Positives = 13/21 (61%)
 Frame = +2

Query: 2   ICLFYYILLFVMMTSYXKLVL 64
           +C++Y+   F++ T +   +L
Sbjct: 144 LCIYYFYCAFIIFTVHLLFLL 164


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 42  HHIXNLFYTYXSAGKTSLKYDVIYF 116
           H + ++F+     G  +LKY   YF
Sbjct: 374 HSVRSVFFLSEIFGLVNLKYRETYF 398


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +1

Query: 184 CAIFLSIFCFNCXHSVVFLFSMTATSFMLVFR 279
           CA  ++ +CF   +S +   +     F  V R
Sbjct: 181 CAFGINTYCFRNDNSEILKMATQLVDFKSVIR 212


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 195 KNCTTYFNK 169
           KNC  YFN+
Sbjct: 145 KNCVIYFNR 153


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,699
Number of Sequences: 336
Number of extensions: 1314
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)