Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14e14
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1702 + 28828635-28828905,28831222-28831448,28831601-288322...    28   2.4  
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158...    26   9.9  
08_01_0317 - 2807275-2807487,2807573-2807737,2807818-2807987,280...    26   9.9  

>07_03_1702 +
           28828635-28828905,28831222-28831448,28831601-28832233,
           28832311-28832760
          Length = 526

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 107 DIIF*TCFTSXXVRVKQVXDMMSSSQIIVCNK 12
           D+I  TCF S  V+ KQ+ DM+   Q  V  K
Sbjct: 209 DVISRTCFGSSYVKGKQIFDMIRELQKTVSTK 240


>09_01_0102 +
           1582793-1582898,1582988-1583093,1584115-1584172,
           1584676-1584745,1585132-1585197,1586374-1586429,
           1587992-1588078,1588819-1589139,1589827-1589946,
           1590747-1590881,1591529-1591605,1591681-1591756,
           1592800-1592874,1592971-1593075,1593299-1593374,
           1594482-1594617,1594702-1594804,1595186-1595298,
           1596907-1597111,1597173-1597301,1597403-1597517,
           1597710-1597795,1599108-1599203,1599615-1599751,
           1600374-1600476,1601809-1601888,1602013-1602091,
           1602241-1602298,1602489-1602586,1602673-1602767,
           1602861-1602918
          Length = 1074

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 293 LKLLRRKTNIKEVAVMLNKKTTECXQLKQKXDKKIAQRILIKI 165
           +KL    T+ +  A  L +K+ E   +K+K +  IAQ + +KI
Sbjct: 294 VKLKEELTDKERNARSLVEKSREVTMMKEKLEDDIAQAVALKI 336


>08_01_0317 -
           2807275-2807487,2807573-2807737,2807818-2807987,
           2808256-2808724,2810581-2810727,2810968-2810976,
           2811054-2811890
          Length = 669

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 353 FLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAVMLNK 237
           +LKLG  F    C  +    L LLRR  NI+++ + LNK
Sbjct: 565 YLKLGEWFLRDGCYPL----LFLLRRSPNIEKLHLQLNK 599


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,530,902
Number of Sequences: 37544
Number of extensions: 99837
Number of successful extensions: 171
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)