Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14e14
(406 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical ... 27 3.9
AF003137-9|AAB93646.3| 883|Caenorhabditis elegans Hypothetical ... 27 5.1
Z75547-14|CAA99901.2| 461|Caenorhabditis elegans Hypothetical p... 26 9.0
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p... 26 9.0
Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical p... 26 9.0
Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical p... 26 9.0
Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical p... 26 9.0
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr... 26 9.0
Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical pr... 26 9.0
Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical pr... 26 9.0
Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical pr... 26 9.0
Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical pr... 26 9.0
AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor prote... 26 9.0
>AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical
protein R11E3.4 protein.
Length = 747
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 283 NSFKLSKAISRQVLALNK*PNFKKVXAKSPRFYNVLKCSCC 405
N+F + K R V+ + K P + ++ R NV++C CC
Sbjct: 283 NTF-VYKYTERNVVDVEKYPELHALTEEAERPNNVIRCECC 322
>AF003137-9|AAB93646.3| 883|Caenorhabditis elegans Hypothetical
protein C27A12.9 protein.
Length = 883
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 190 IFLSIFCFNCXHSVVFLFSMTATSFMLVFRR---NSFKLSKA 306
IF F F C ++VF+FS +F L++R+ FK S+A
Sbjct: 839 IFAPKFIFECILTIVFIFS---ANFFLIYRQFFGEKFKNSEA 877
>Z75547-14|CAA99901.2| 461|Caenorhabditis elegans Hypothetical
protein R11D1.7 protein.
Length = 461
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 187 AIFLSIFCFNCXHSVVFLFSMTATSFMLVFRRNSFKLSKAISRQV 321
A FL F C ++F+F T ++F N F + K QV
Sbjct: 24 ASFLVEKRFLCAPRMIFVFQQTFMLIYIIFFLNYFNIDKQTDEQV 68
>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 329 RAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECXQLKQKXDK 195
R ++ LDNL R ++E +NK TE QLK++ DK
Sbjct: 1034 RDSALYEVRLDNLDRAREVDVLRET---VNKLKTENKQLKKEVDK 1075
>Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical
protein F45E10.1a protein.
Length = 1583
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 329 RAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECXQLKQKXDK 195
R ++ LDNL R ++E +NK TE QLK++ DK
Sbjct: 1068 RDSALYEVRLDNLDRAREVDVLRET---VNKLKTENKQLKKEVDK 1109
>Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical
protein F45E10.1d protein.
Length = 1520
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 329 RAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECXQLKQKXDK 195
R ++ LDNL R ++E +NK TE QLK++ DK
Sbjct: 1005 RDSALYEVRLDNLDRAREVDVLRET---VNKLKTENKQLKKEVDK 1046
>Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical
protein F45E10.1c protein.
Length = 1654
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 329 RAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECXQLKQKXDK 195
R ++ LDNL R ++E +NK TE QLK++ DK
Sbjct: 1139 RDSALYEVRLDNLDRAREVDVLRET---VNKLKTENKQLKKEVDK 1180
>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical protein
F45E10.1b protein.
Length = 1549
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 329 RAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECXQLKQKXDK 195
R ++ LDNL R ++E +NK TE QLK++ DK
Sbjct: 1034 RDSALYEVRLDNLDRAREVDVLRET---VNKLKTENKQLKKEVDK 1075
>Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical protein
F45E10.1a protein.
Length = 1583
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 329 RAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECXQLKQKXDK 195
R ++ LDNL R ++E +NK TE QLK++ DK
Sbjct: 1068 RDSALYEVRLDNLDRAREVDVLRET---VNKLKTENKQLKKEVDK 1109
>Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical protein
F45E10.1d protein.
Length = 1520
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 329 RAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECXQLKQKXDK 195
R ++ LDNL R ++E +NK TE QLK++ DK
Sbjct: 1005 RDSALYEVRLDNLDRAREVDVLRET---VNKLKTENKQLKKEVDK 1046
>Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical protein
F45E10.1c protein.
Length = 1654
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 329 RAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECXQLKQKXDK 195
R ++ LDNL R ++E +NK TE QLK++ DK
Sbjct: 1139 RDSALYEVRLDNLDRAREVDVLRET---VNKLKTENKQLKKEVDK 1180
>Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical
protein F45E10.1e protein.
Length = 1234
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 329 RAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECXQLKQKXDK 195
R ++ LDNL R ++E +NK TE QLK++ DK
Sbjct: 719 RDSALYEVRLDNLDRAREVDVLRET---VNKLKTENKQLKKEVDK 760
>AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor protein
UNC-53 protein.
Length = 1583
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 329 RAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECXQLKQKXDK 195
R ++ LDNL R ++E +NK TE QLK++ DK
Sbjct: 1068 RDSALYEVRLDNLDRAREVDVLRET---VNKLKTENKQLKKEVDK 1109
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,236,558
Number of Sequences: 27780
Number of extensions: 108948
Number of successful extensions: 247
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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