Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14e11
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 32 0.34
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 31 1.0
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 31 1.0
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 31 1.0
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 31 1.0
U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical pr... 29 3.1
U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical pr... 29 3.1
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 29 4.1
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 4.1
Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF100656-3|AAF99968.1| 265|Caenorhabditis elegans Hypothetical ... 28 5.5
U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl... 28 7.2
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl... 28 7.2
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 28 7.2
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 28 7.2
AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical ... 28 7.2
Z81593-10|CAI94504.1| 349|Caenorhabditis elegans Hypothetical p... 27 9.6
U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical pr... 27 9.6
U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ... 27 9.6
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ... 27 9.6
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 27 9.6
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 27 9.6
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 32.3 bits (70), Expect = 0.34
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -3
Query: 641 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTP--Y*KEFAPGLKPPLSSEAPSAYLT 468
P+P + T+T +NP TPTT + +I +P P + P S+ AP+A +
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVN 547
Query: 467 PSSLGMAKGVSP 432
P+S A V P
Sbjct: 548 PTSPTTAPTVPP 559
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 658 PYASSHPPLRSRXHQPDHQIPDS 590
P +S HPPL S H +H PD+
Sbjct: 66 PTSSHHPPLNSSSHHSNHNYPDT 88
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -3
Query: 644 PPSPAISXTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 474
P SP+ S TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1607 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1666
Query: 473 LTPSSLGMAKGVSPPY 426
S SP Y
Sbjct: 1667 SYSPSSPRYSPTSPTY 1682
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = -3
Query: 641 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPS 462
P+P + T+T +NP TPTT TS N ++P+ + + AP +P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548
Query: 461 SLGMAKGVSPP 429
+ S P
Sbjct: 549 TTPTHTTASQP 559
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -3
Query: 644 PPSPAISXTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 474
P SP+ S TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1614 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1673
Query: 473 LTPSSLGMAKGVSPPY 426
S SP Y
Sbjct: 1674 SYSPSSPRYSPTSPTY 1689
>U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical
protein F59A3.2b protein.
Length = 687
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -3
Query: 641 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SAYLTP 465
P+P I R PR TP L + I+P+ +F P + PP +P A P
Sbjct: 514 PTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNP 570
Query: 464 SSLGMAKGVSPPYFQVNDESQASRLISR 381
++L S P V ++ ++R
Sbjct: 571 TNLYPTPPSSLPNTYVPNQESFDESVNR 598
>U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical
protein F59A3.2a protein.
Length = 975
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -3
Query: 641 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SAYLTP 465
P+P I R PR TP L + I+P+ +F P + PP +P A P
Sbjct: 514 PTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNP 570
Query: 464 SSLGMAKGVSPPYFQVNDESQASRLISR 381
++L S P V ++ ++R
Sbjct: 571 TNLYPTPPSSLPNTYVPNQESFDESVNR 598
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -3
Query: 665 VSPLCIKPP-SPAISXTSTRSSNPRFHTPTTPDLTSISI 552
VS C++PP +P + ++T ++ P+ T +T TS +I
Sbjct: 1145 VSMACVRPPTTPTTTTSTTTTTTPKLTTTSTLPSTSTAI 1183
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = -3
Query: 644 PPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAP-GLKPPLSSEAPSAYLT 468
P S I+ TS+ S+ P + T T + + E ++ SS +PS + T
Sbjct: 695 PDSTIITSTSSTSTRPGTSSTATDSPTMDDTSKTSTVTSEGTTLSIESTESSASPSDFTT 754
Query: 467 PSSLGMAKGVSPPYFQVNDESQAS 396
P +G VS Q + S +S
Sbjct: 755 PDFIGFTSSVSRTSEQYSSSSPSS 778
>Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical
protein ZK930.7 protein.
Length = 167
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 647 KPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLT 540
KPP+P+ T N + P++P T S PLT
Sbjct: 101 KPPAPSARTPPTIYENLAINAPSSPSATDASSVPLT 136
>AF100656-3|AAF99968.1| 265|Caenorhabditis elegans Hypothetical
protein F49F1.1 protein.
Length = 265
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = -3
Query: 641 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPS 480
P+ S ++ + P T TP+LT++++ P+T K + P +++ P+
Sbjct: 160 PATCGSCSNGTTGVPLVLTTLTPELTTVTVEPITSTLKPTTTTITPTTTTKLPT 213
>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform b protein.
Length = 1590
Score = 27.9 bits (59), Expect = 7.2
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = -3
Query: 668 AVSPLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSE 489
+VSPL PP PA + + P T +I I + + + +P PP SS
Sbjct: 310 SVSPLPPPPPEPAPAREKVENGGPTTFKMTFKKAANIPILKTSAFEQPSSP---PPSSSV 366
Query: 488 APSAYLTP--SSLGMAKGVSPPYFQVNDESQAS 396
+ S L+ SS +A SP N + AS
Sbjct: 367 SSSISLSEVNSSTSIASESSPAKRSSNFDLTAS 399
>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform a protein.
Length = 1604
Score = 27.9 bits (59), Expect = 7.2
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = -3
Query: 668 AVSPLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSE 489
+VSPL PP PA + + P T +I I + + + +P PP SS
Sbjct: 324 SVSPLPPPPPEPAPAREKVENGGPTTFKMTFKKAANIPILKTSAFEQPSSP---PPSSSV 380
Query: 488 APSAYLTP--SSLGMAKGVSPPYFQVNDESQAS 396
+ S L+ SS +A SP N + AS
Sbjct: 381 SSSISLSEVNSSTSIASESSPAKRSSNFDLTAS 413
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 503 PLSSEAPSAYLTPSSLGMAKGVSPP 429
P+++EAP+A PS + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 503 PLSSEAPSAYLTPSSLGMAKGVSPP 429
P+++EAP+A PS + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227
>AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical
protein Y41G9A.5 protein.
Length = 402
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 650 IKPPSPAISXTSTRSSNPRFHTPTTPD-LTSISINPLTP 537
+ SPAI T+T +++P+ T TP+ +T++ + P
Sbjct: 266 VSSDSPAIESTTTTTASPKTSTTLTPEPITTVPAKDVKP 304
>Z81593-10|CAI94504.1| 349|Caenorhabditis elegans Hypothetical
protein T20B3.15 protein.
Length = 349
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -1
Query: 208 VFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSS 35
++D +C F+ + + YD I T + LS S AS+ S R L+ + V S
Sbjct: 235 IYDETCVFNYDNYCYIPYDQINTSKQGQSICELSGSNLASIRSGNENRFLMSTVSVFS 292
>U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical
protein C14A11.6 protein.
Length = 597
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 629 ISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGM 450
+S +STR+++ + +TP T+ +I P P E + +K + E A P+ M
Sbjct: 528 LSHSSTRTADTIAASTSTPPSTTSNITPSRPTTSEQSNTIKRKTAFEKEDA--PPAKRSM 585
Query: 449 AKGVSPPYF 423
A YF
Sbjct: 586 ATSTDDAYF 594
>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
protein 25, isoformb protein.
Length = 1130
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 485 EPLMTTEALTPARIPSNTAS 544
EP++++E L P R+PS T S
Sbjct: 877 EPILSSEVLQPTRLPSATTS 896
>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
protein 25, isoforma protein.
Length = 1237
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 485 EPLMTTEALTPARIPSNTAS 544
EP++++E L P R+PS T S
Sbjct: 984 EPILSSEVLQPTRLPSATTS 1003
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -3
Query: 662 SPLCIKPPSPAISXTSTRSS--NPRFHTPTTPDL 567
SP ++ P+ + S T ++S NP++H PT DL
Sbjct: 580 SPDAVETPTNSGSSTPPQTSVRNPKYHVPTPTDL 613
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -3
Query: 662 SPLCIKPPSPAISXTSTRSS--NPRFHTPTTPDL 567
SP ++ P+ + S T ++S NP++H PT DL
Sbjct: 482 SPDAVETPTNSGSSTPPQTSVRNPKYHVPTPTDL 515
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,421,365
Number of Sequences: 27780
Number of extensions: 320105
Number of successful extensions: 1210
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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