Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14e10
         (369 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   0.99 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   2.3  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   3.0  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   5.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   9.2  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 0.99
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 55  FFPSDFSPLAYIFRGV*HFV 114
           FFP DF+ L +IF  V  ++
Sbjct: 360 FFPVDFTLLGFIFGSVTSYI 379


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 17/77 (22%), Positives = 32/77 (41%)
 Frame = -1

Query: 303 FSIFSSFTYALTMSDAPGRPMKFPYTFSAKVAQFPYKFYLQNLWLWRYWAAAIVISSPLF 124
           +S  S  T A+   ++P + +     +   +  FP  FY QN   W+      +  +  F
Sbjct: 143 YSYISLITMAI--QNSPQKMLTLSEIYQFIMDLFP--FYRQNQQRWQNSIRHSLSFNDCF 198

Query: 123 YKIHKMSNSPENVSKWA 73
            K+ +  + P   S W+
Sbjct: 199 VKVPRTPDKPGKGSFWS 215


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 111 CEFCRRVVRKLRWRQP 158
           C   +RVV+   WR+P
Sbjct: 249 CNGLKRVVKLSNWREP 264


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -1

Query: 177 LWLWRYWAAAIVISSPLFYKIHKMSNSPENVSKWAEIRRKEAAEHH 40
           L L   +   I+ ++ +FY  H   ++   VSK  E+  K     H
Sbjct: 630 LHLLYIFLVGIMYAADVFYICHVCCSTIHEVSKAGELIHKIETNDH 675


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 130 W*GNYDGGSPVT 165
           W   +DG SP+T
Sbjct: 916 WVAPFDGNSPIT 927


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,337
Number of Sequences: 336
Number of extensions: 1851
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7616520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)