Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14e08
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   3.0  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   4.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   6.9  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 431 VPNVIIKLNNFDQIMSVAPNKA 366
           V N+I K +NF  I+S+ P+ A
Sbjct: 183 VLNIIPKQDNFRAIVSIFPDSA 204


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 50  ISTILLPVRPPVT 88
           +++ LLPVRPP+T
Sbjct: 358 VTSGLLPVRPPLT 370


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 550 TAPVSNTLNRHSLCSAFPTIAKRLWTLSK 464
           T P+S  +    L   FP   + LW L K
Sbjct: 257 TTPLSEEVLLDELLRHFPERIQSLWVLEK 285


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,129
Number of Sequences: 336
Number of extensions: 3211
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)