Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14e08
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    31   0.11 
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    28   1.4  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   7.5  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   7.5  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   9.9  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   9.9  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    25   9.9  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -2

Query: 326 SIAISSNGIVPINMPDFSPSNNAFDYSDYVNRTNINFVTQRVLI 195
           S+ I+    +P+++P +SP  N+FD SD  + T+     +  L+
Sbjct: 265 SVVITDENYLPVSLPVYSPVLNSFDDSDSYSSTDSELSEEAFLL 308


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 629 NLYNKLNWERTRRLMKGDVPSNCXTVNRSSLKYIKQAQSL 510
           NL+ K ++ + RRL   D PS   T N    +   QA  +
Sbjct: 580 NLFRKNSFPKRRRLSNSDTPSETTTPNNEQEQVSNQANKV 619


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 359 YKKIRLFCKNDSIAISSNGIVPINMPDFSPSNNAFDYSD 243
           Y+K   F  +DS A+ SN ++  +    + SNN+ D+ D
Sbjct: 259 YRKNCHFEVHDSDALLSNQLLSADKHQLAASNNSQDFED 297


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 413 KLNNFDQI-MSVAPNKAESYKKIRLFCKNDSIAISSN 306
           KL+ FD+I  S AP      +K R FCK + I +SSN
Sbjct: 319 KLHYFDEIGYSHAP-LLHCPRKGRCFCKPEEIDLSSN 354


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 526 NRHSLCSAFPTIAKRLWTLSKCSK 455
           N H+     P + +RLW L+KC++
Sbjct: 651 NSHADDVFSPNMVERLWVLAKCTR 674


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 233 RTNINFVTQRVLIDGGFSSGVTVTPI 156
           +TN +F  +R  ++ G+S G T+ PI
Sbjct: 303 KTNDSFEVKREDLESGYSYGRTIVPI 328


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 314 SSNGIVP-INMPDFSPSNNAFDYSDYVNRTNI 222
           +  G++P  N P F P N + +     NRTNI
Sbjct: 180 NDGGMIPTFNHPIFHPENRSRNEQASANRTNI 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,404
Number of Sequences: 5004
Number of extensions: 56074
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)