Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14e08
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   2.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.6  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   2.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.1  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 452 IIFPYQLVPNVIIKLNNFDQIMSVAPNKAESYKKIRLFC 336
           +IF Y L   VII+ N  ++I+ +    A S K IR +C
Sbjct: 6   VIFVYILSVAVIIRANGINEILKI---MAVSMKDIR-YC 40


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 566 NCXTVNRSSLKYIKQAQSLLGIP 498
           NC T   +SL+  KQ  + +G P
Sbjct: 240 NCWTQTENSLEKAKQVGAFMGCP 262


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 566 NCXTVNRSSLKYIKQAQSLLGIP 498
           NC T   +SL+  KQ  + +G P
Sbjct: 111 NCWTQTENSLEKAKQVGAFMGCP 133


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 566 NCXTVNRSSLKYIKQAQSLLGIP 498
           NC T   +SL+  KQ  + +G P
Sbjct: 240 NCWTQTENSLEKAKQVGAFMGCP 262


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 635 IDNLYNKLNWERTRRLMKGD 576
           +DNL  +L  ER  +L +GD
Sbjct: 626 VDNLLGELGGERLLKLAQGD 645


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/40 (25%), Positives = 15/40 (37%)
 Frame = -3

Query: 121 YETDGGRHYIKSDGRSHRQQYRRYHPSQQLAD*RRSTWPI 2
           Y T G  H+    G SH      +H S       + + P+
Sbjct: 409 YSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPL 448


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -2

Query: 629 NLYNKLNWERTRRLMKGDVPSNCXTVNRSSLKYIKQAQSLLGIPDYSQTVVDFVKMFQKI 450
           N+  KL+  R     +G+  +N    N+ S +  + A      P Y Q      K+ QK 
Sbjct: 77  NITIKLD-TRAEDSTRGEQEANLGYTNKMSTRGKRPAS-----PGYVQPPTKHQKLDQKF 130

Query: 449 IFPYQ 435
           IFP +
Sbjct: 131 IFPQE 135


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = +3

Query: 354 FVGLCFIWRNRHYLVKVVQFYDYVGHQLIGENYFLEHFDKVHNRLAIVGNAEQ 512
           FV   FIW     L+ ++ FY  +   +      L    K  N  ++V N ++
Sbjct: 220 FVTCIFIWAYVIPLIFIILFYSRLLSSIRNHEKMLREQAKKMNVKSLVSNQDK 272


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 576 VALHKPARSLPIQFVVQIINFLVRQI 653
           V +  P R L IQ   QI+ F +  I
Sbjct: 276 VVIVSPTRELTIQIWQQIVKFSLNSI 301


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = +3

Query: 354 FVGLCFIWRNRHYLVKVVQFYDYVGHQLIGENYFLEHFDKVHNRLAIVGNAEQ 512
           FV   FIW     L+ ++ FY  +   +      L    K  N  ++V N ++
Sbjct: 220 FVTCIFIWAYVIPLIFIILFYSRLLSSIRNHEKMLREQAKKMNVKSLVSNQDK 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,981
Number of Sequences: 438
Number of extensions: 4128
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)