Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14e06
         (801 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    26   0.30 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    21   8.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.7  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    21   8.7  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.7  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 633 LVQICKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTG 520
           L  + ++  VYP+     C   + E++ SD P +P  G
Sbjct: 182 LETLSQLMDVYPNNDGTKCLVVTDEASISDAPFFPHRG 219


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -1

Query: 603 YPHP--APEGCTSASSESAPSDQPIYPDTG 520
           YP+P  +PE    A+S   PS  P+ P  G
Sbjct: 172 YPYPILSPEMSQVAASWHTPSMYPLSPGAG 201


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -1

Query: 603 YPHP--APEGCTSASSESAPSDQPIYPDTG 520
           YP+P  +PE    A+S   PS  P+ P  G
Sbjct: 64  YPYPILSPEMSQVAASWHTPSMYPLSPGAG 93


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 198 VYKCPEAGFALDNAVW 245
           +  CP AG  +D+ VW
Sbjct: 529 IVHCPFAGHPVDSVVW 544



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 83   RKHWGGGVLGNKSNARIAKLEK 18
            R+ W G +LG     R+A  +K
Sbjct: 1021 REEWNGDILGYYVGYRLANSDK 1042


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 651 ALTNGKVLWPLLEER 695
           A   G V+WP++E+R
Sbjct: 236 AQATGFVVWPIIEQR 250


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 651 ALTNGKVLWPLLEER 695
           A   G V+WP++E+R
Sbjct: 236 AQATGFVVWPIIEQR 250


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 651 ALTNGKVLWPLLEER 695
           A   G V+WP++E+R
Sbjct: 236 AQATGFVVWPIIEQR 250


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 651 ALTNGKVLWPLLEER 695
           A   G V+WP++E+R
Sbjct: 236 AQATGFVVWPIIEQR 250


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 284 VLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESG 153
           VLF+  +   +GV Y ++ G+SR   + +    T LAL ++  G
Sbjct: 33  VLFVIIVAGNVGVLYTLLFGRSRKSRMNY--FITHLALADLSVG 74


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 570  ASSESAPSDQPIYPD 526
            ASS  APS  P+ PD
Sbjct: 2288 ASSTMAPSTTPMVPD 2302


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 152 DRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKL 24
           D+ +F  ++  +K+  N + + L     GG+   K +  IAK+
Sbjct: 154 DKVNFVTLLGELKSALNAKGKTLSAAVSGGIASCKLSYDIAKV 196


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 384 QHHPIRHKHSHQVSREEEGA 325
           QHH   H+  H +   ++GA
Sbjct: 177 QHHQPHHQQQHMMYGGQQGA 196


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 384 QHHPIRHKHSHQVSREEEGA 325
           QHH   H+  H +   ++GA
Sbjct: 179 QHHQPHHQQQHMMYGGQQGA 198


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,343
Number of Sequences: 336
Number of extensions: 3631
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)