Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14e06
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 254 1e-68
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 54 2e-08
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 54 2e-08
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 29 1.0
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 29 1.0
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 7.2
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 7.2
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 9.5
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.5
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 9.5
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 254 bits (621), Expect = 1e-68
Identities = 124/251 (49%), Positives = 165/251 (65%), Gaps = 1/251 (0%)
Frame = -2
Query: 758 RKVAARPHWWSKRLSPKKIVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKA 579
+KVA P +++ + K NPLF RP++F IGQ IQP RDLSRFV+WP+YIR+QR++
Sbjct: 6 KKVAPSP--FAQPKAAKTTKNPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRK 63
Query: 578 VLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXX 399
+L RLKVPP I QF +TLDK TA +FK+L KYRPET
Sbjct: 64 ILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQ 123
Query: 398 XXKR-PNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 222
+ P ++ G N V L+E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K
Sbjct: 124 DVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNK 183
Query: 221 SRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSN 42
+RLG ++H+KT LA+T V D+ + +V A+ NF+ +Y+E R+ WGGG++G K+
Sbjct: 184 ARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKTQ 243
Query: 41 ARIAKLEKAKA 9
A +AK KA A
Sbjct: 244 ALLAKRAKAAA 254
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = -2
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 210
+R G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ LG
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 54.0 bits (124), Expect = 2e-08
Identities = 33/100 (33%), Positives = 47/100 (47%)
Frame = -2
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 198
I G V K V K + LV++A D+ P++++ +P LC VPY K LG +
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113
Query: 197 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 78
K T + V G + SKV E + E YEE+ K
Sbjct: 114 TKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEIIK 147
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = -1
Query: 762 GKKSSRPPPLVVKKVEPQEDRESSLREEAKELCHWSGHSANS*LVQICKMAQVYPHPAPE 583
GK+ +PPP ++ Q D S L+ E + L S S Q + ++P +P
Sbjct: 298 GKQYDQPPPSFATRLAKQSDPNSLLQSEIQHLA-----SIESITAQAAPLVTIHPFKSPS 352
Query: 582 GCTSASS 562
S S
Sbjct: 353 LSASPGS 359
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -1
Query: 792 WCRRSLXXKVGKKSSRPPPLV---VKKVEPQ 709
W KVGK + RPPPLV V ++EP+
Sbjct: 176 WAHVKHIMKVGKNNFRPPPLVESSVVRIEPK 206
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 584 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 483
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 356 LCLCRIGWC 382
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 600 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 511
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +3
Query: 402 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 572
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 374 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 252
+SG+ +T+ + +V I + +D +E LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,071
Number of Sequences: 5004
Number of extensions: 59996
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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