Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14e04
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 139 3e-34
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch... 29 0.50
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1... 29 0.66
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 29 0.66
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 29 0.87
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces... 26 4.7
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 25 8.1
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy... 25 8.1
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 8.1
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 139 bits (337), Expect = 3e-34
Identities = 81/216 (37%), Positives = 109/216 (50%)
Frame = -3
Query: 713 SGGQYRDGTTDITRTRHMSGNPTAEQRDAFTRVLKGQIMIGSALFPKGVKGNVLDSFARH 534
SG QY+DGTTD+TRT H G P+ +R T LKG I + + +FPKG G ++D AR
Sbjct: 398 SGAQYKDGTTDVTRTWHF-GEPSEFERQTATLALKGHIALANIVFPKGTTGYMIDVLARQ 456
Query: 533 ALWEXXXXXXXXXXXXXXXXLNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYKVGEYG 354
LW+ LNVHE P G+ R + L G + SNEPGFY+ G +G
Sbjct: 457 YLWKYGLDYLHGTGHGVGSFLNVHELPVGIGSREVFNSAPLQAGMVTSNEPGFYEDGHFG 516
Query: 353 IRHEDLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEIS 174
R E+ + I V N + GR LG LTL P+ ++ ID +L+ E+
Sbjct: 517 YRVENCVYITEV----------NTENRFAGRTYLGLKDLTLAPHCQKLIDPSLLSPEEVK 566
Query: 173 YVNAYHRRVLDTLSPILKERGLLKDLEWLEGQCIPI 66
Y+N YH V TLSP+L + +WL PI
Sbjct: 567 YLNEYHSEVYTTLSPMLS----VSAKKWLSKHTSPI 598
>SPBC16D10.01c ||SPBC418.03c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 29.5 bits (63), Expect = 0.50
Identities = 24/112 (21%), Positives = 52/112 (46%)
Frame = -3
Query: 407 VGQILSNEPGFYKVGEYGIRHEDLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLV 228
+ QI N K+ + G+ ++E + +DKG D K ++G Y L + L +
Sbjct: 84 LAQINDNGSKALKLYQKGVT---ILERLLIDKGEDADLKKKIQGAYCSIAELFMTDLCMQ 140
Query: 227 PNQRECIDAEILTDFEISYVNAYHRRVLDTLSPILKERGLLKDLEWLEGQCI 72
P+ E + E+ T + ++A + L TL+ + + +++ + +C+
Sbjct: 141 PDAEE--NCELYTKLALQ-IDATNAEALQTLASMRISQQKIEEAKDALSKCL 189
>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 486
Score = 29.1 bits (62), Expect = 0.66
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 713 SGGQYRDGTTDITRTRHMSGNPTAEQRDAFTRVLKGQ 603
+GG++ TDI+RT ++G + QRD + VL Q
Sbjct: 318 AGGEFGGYVTDISRTWPINGKFSTVQRDLYQAVLNVQ 354
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 29.1 bits (62), Expect = 0.66
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 236 TLVPNQRECIDAEILTDFEISYVNAYHRRVLDTLSPILKERGLLKDLEWL 87
TL+ Q +D +L E ++ ++L L+P E+ LK LEWL
Sbjct: 68 TLLGEQSVQVDRVLLNRTENEKIDLECVQILRLLAPFFTEKNALKVLEWL 117
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 28.7 bits (61), Expect = 0.87
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 351 NSVFPDFVEARFVAQYLSNVQSRIVGVRTPRDPGRTLVHVEVV 479
N FP AR AQ+++N S+ + V T DP R L+ VV
Sbjct: 650 NMHFPQSTNARSEAQFIANTDSQYL-VPTSGDPLRGLIQDHVV 691
>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 404 GQILSNEPGFYKVGEYGIRHEDLI 333
G + + EPG Y E GIR ED +
Sbjct: 408 GNVFTVEPGIYIPDEIGIRIEDAV 431
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 368 VGEYGIRHEDLIEIVAVDKGSDHPKAKNL-RGDYDGRGVLGFSTLTLV 228
VG+ + +DL+EI + G P L GDY RG T+TL+
Sbjct: 49 VGDIHGQFDDLLEIFRI--GGPCPYTNYLFLGDYVDRGYYSIETITLL 94
>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -2
Query: 420 SWTERWTD---IEQRTWLLQSRGIRNSPRRSNRDCGC 319
S+ E+ T+ IE W+L + G+ N R+N GC
Sbjct: 60 SYAEKETEVQAIEVTKWILSNGGVWNGIDRANETPGC 96
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -2
Query: 441 VASVPRRSWTERWTDIEQRTW 379
V+ +R+WT W I R W
Sbjct: 204 VSQQQQRAWTRAWNAIRNRAW 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,833
Number of Sequences: 5004
Number of extensions: 55550
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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