Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14e04
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0747 - 5724586-5724648,5725229-5725309,5725564-5725656,572... 152 3e-37
11_05_0099 - 19044772-19044837,19044896-19045051,19045529-190456... 142 3e-34
06_03_1033 - 27035977-27036144,27036420-27036544,27036695-270367... 134 7e-32
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585... 132 3e-31
07_01_0252 + 1883709-1885306,1886338-1886466,1887319-1887341,188... 32 0.52
01_06_0685 - 31218716-31218873,31218974-31219266,31219366-312195... 29 4.8
07_01_0130 - 963856-965454 28 6.4
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 28 6.4
12_02_0715 - 22453747-22453935,22454347-22454457,22454514-224545... 28 8.5
>07_01_0747 - 5724586-5724648,5725229-5725309,5725564-5725656,
5725775-5725929,5726023-5726131,5726291-5726481,
5727463-5727614,5728453-5728728,5729415-5729587,
5730023-5730298,5730839-5730958,5731051-5731176,
5731629-5731970
Length = 718
Score = 152 bits (368), Expect = 3e-37
Identities = 87/216 (40%), Positives = 118/216 (54%)
Frame = -3
Query: 713 SGGQYRDGTTDITRTRHMSGNPTAEQRDAFTRVLKGQIMIGSALFPKGVKGNVLDSFARH 534
SG QY DGTTDITRT H G PT Q++ FTRVL+G I + A+FP+ G VLD AR
Sbjct: 519 SGAQYIDGTTDITRTVHF-GEPTPRQKECFTRVLQGHIALDQAVFPERTPGFVLDVLARS 577
Query: 533 ALWEXXXXXXXXXXXXXXXXLNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYKVGEYG 354
+LW+ LNVHEGP +S+R Y + L G I+SNEPG+Y+ +G
Sbjct: 578 SLWKIGLDYRHGTGHGVGAALNVHEGPQSISYR-YGNLTALQKGMIVSNEPGYYEDNSFG 636
Query: 353 IRHEDLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEIS 174
IR E+L+ + K NL + G LGF LT VP Q + +D +L+ EI+
Sbjct: 637 IRIENLLLV----------KEVNLPNSFGGVSYLGFEKLTFVPIQSKLVDLSLLSPSEIN 686
Query: 173 YVNAYHRRVLDTLSPILKERGLLKDLEWLEGQCIPI 66
++N YH V + +SP+L L+WL P+
Sbjct: 687 WINEYHDEVWEKVSPLLSGH----SLDWLRKNTRPL 718
>11_05_0099 - 19044772-19044837,19044896-19045051,19045529-19045653,
19045773-19045844,19045947-19046051,19046509-19046563,
19047334-19047414,19047499-19047633,19048279-19048342,
19048844-19048911,19049082-19049168,19050247-19050501,
19050616-19050738,19050866-19051150,19051712-19051851,
19052385-19052445,19052537-19052637,19052807-19052870,
19053020-19053127
Length = 716
Score = 142 bits (343), Expect = 3e-34
Identities = 82/216 (37%), Positives = 112/216 (51%)
Frame = -3
Query: 713 SGGQYRDGTTDITRTRHMSGNPTAEQRDAFTRVLKGQIMIGSALFPKGVKGNVLDSFARH 534
SG QY DGTTDITRT H G P+ ++ +T VLKG I + SA+FP G G+ LD AR
Sbjct: 494 SGAQYLDGTTDITRTVHF-GKPSEHEKSCYTAVLKGHIALDSAVFPNGTTGHALDILART 552
Query: 533 ALWEXXXXXXXXXXXXXXXXLNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYKVGEYG 354
LW LNVHEGP +S+RP + L +++EPG+Y+ G +G
Sbjct: 553 PLWRSGLDYRHGTGHGIGSYLNVHEGPHLISFRPSARNIPLQASMTVTDEPGYYEDGSFG 612
Query: 353 IRHEDLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEIS 174
IR E+++ + K N + ++ +G L F +T P Q + ID +LT EI
Sbjct: 613 IRLENVLIV----------KEANTKYNFGDKGYLAFEHITWAPYQTKLIDTTLLTPAEIE 662
Query: 173 YVNAYHRRVLDTLSPILKERGLLKDLEWLEGQCIPI 66
+VNAYH L P L E ++ EWL PI
Sbjct: 663 WVNAYHADCRKILQPYLNE----QEKEWLRKATEPI 694
>06_03_1033 - 27035977-27036144,27036420-27036544,27036695-27036766,
27036872-27036976,27037513-27037567,27038196-27038276,
27039109-27039159,27039531-27039594,27040783-27040850,
27040993-27041079,27041401-27041655,27041768-27041890,
27042013-27042297,27042948-27043087,27043696-27043759,
27043929-27044048
Length = 620
Score = 134 bits (324), Expect = 7e-32
Identities = 77/212 (36%), Positives = 109/212 (51%)
Frame = -3
Query: 701 YRDGTTDITRTRHMSGNPTAEQRDAFTRVLKGQIMIGSALFPKGVKGNVLDSFARHALWE 522
Y DGTTDITRT H G P+ ++ +T VLKG I + +A+FP G G+ +D AR LW
Sbjct: 420 YLDGTTDITRTVHF-GKPSEHEKSCYTAVLKGHIALDTAVFPNGTTGHAIDILARTPLWR 478
Query: 521 XXXXXXXXXXXXXXXXLNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYKVGEYGIRHE 342
LNVHEGP +S+RP + L +++EPG+Y+ G +GIR E
Sbjct: 479 SGLDYRHGTGHGIGSYLNVHEGPHLISFRPSARNVPLQASMTVTDEPGYYEDGSFGIRLE 538
Query: 341 DLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEISYVNA 162
+++ + K N + ++ +G L F +T P Q + ID +LT EI +VNA
Sbjct: 539 NVLIV----------KEANTKFNFGDKGYLAFEHITWTPYQTKLIDTTLLTPAEIEWVNA 588
Query: 161 YHRRVLDTLSPILKERGLLKDLEWLEGQCIPI 66
YH L P L E ++ EWL PI
Sbjct: 589 YHSDCRKILQPYLNE----QEKEWLRKATEPI 616
>11_05_0100 - 19056465-19056470,19057043-19057276,19058391-19058546,
19059639-19059763,19059912-19059983,19060080-19060184,
19060691-19060745,19061576-19061656,19062806-19062869,
19064715-19064782,19064947-19065033,19066121-19066285,
19066310-19066429,19066485-19066607,19066738-19067019,
19067936-19068075,19068234-19068335,19068802-19068874,
19069061-19069171
Length = 722
Score = 132 bits (319), Expect = 3e-31
Identities = 76/214 (35%), Positives = 110/214 (51%)
Frame = -3
Query: 704 QYRDGTTDITRTRHMSGNPTAEQRDAFTRVLKGQIMIGSALFPKGVKGNVLDSFARHALW 525
+Y DGTTDITRT H G P+ ++ +T VLKG I + +A+FP G G+ LD AR LW
Sbjct: 445 EYLDGTTDITRTVHF-GKPSEHEKSCYTAVLKGHIALDTAVFPNGTTGHALDILARTPLW 503
Query: 524 EXXXXXXXXXXXXXXXXLNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYKVGEYGIRH 345
+ L VHEGP +S+RP + L +++EPG+Y+ G +GIR
Sbjct: 504 KSGLDYRHGTGHGVGSYLTVHEGPHQISFRPSARNVPLQASMTVTDEPGYYQDGSFGIRL 563
Query: 344 EDLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEISYVN 165
E+++ + + N + ++ +G L F +T P Q + IDA +L EI +VN
Sbjct: 564 ENVLIV----------QDANTKFNFGDKGYLAFEHITWAPYQTKLIDATLLAPAEIEWVN 613
Query: 164 AYHRRVLDTLSPILKERGLLKDLEWLEGQCIPIT 63
YH L P L E ++ EWL PIT
Sbjct: 614 TYHSDCRRILQPYLNE----QEKEWLRKATEPIT 643
>07_01_0252 +
1883709-1885306,1886338-1886466,1887319-1887341,
1887455-1888023
Length = 772
Score = 31.9 bits (69), Expect = 0.52
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = -1
Query: 592 AALYSRKA---LRATFWTASRVTPCGR-WAWTTATGRVTEWATTSTCTRVRPGSRGVR 431
A L+S +A +RA W A RV PCG WA T G T + R R G+R R
Sbjct: 39 AGLFSLRASLGIRAREWPA-RVDPCGGGWAGVTCRGGRVVGVTVAGFRRTRVGARAPR 95
>01_06_0685 -
31218716-31218873,31218974-31219266,31219366-31219559,
31219666-31220409,31221504-31221824
Length = 569
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 404 GQILSNEPGFYKVGEYGIRH 345
G L N PG + +G+YG RH
Sbjct: 109 GTYLRNGPGLWNLGDYGFRH 128
>07_01_0130 - 963856-965454
Length = 532
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 140 TLSPILKERGLLKDLEWLEGQCIPITRK*TLKKLGSLVQQRCKI 9
T S L RGL D E L+ +C+PI +K T+ + ++ C++
Sbjct: 416 TRSYFLLRRGLGDDFE-LKTKCVPIPKKNTVVQQYCVISDYCRV 458
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 383 PGFYKVGEYGIRHEDLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFS 243
P F+ E+ RH L+ I + +G KNL + +L FS
Sbjct: 381 PSFFASEEWKRRHAALVTIAQIAEGCARVMIKNLEQAHAASAILNFS 427
>12_02_0715 -
22453747-22453935,22454347-22454457,22454514-22454572,
22454893-22455067,22455255-22455307,22455670-22455739,
22457044-22457218,22457639-22457703,22458196-22460826
Length = 1175
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 414 TERWTDIEQRTWLLQSRGIRNSPRRS 337
TE+W + +Q +++ RG+R P RS
Sbjct: 763 TEKWANRDQVRKMMRDRGVRKEPGRS 788
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,326,264
Number of Sequences: 37544
Number of extensions: 389349
Number of successful extensions: 1187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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