Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14e04
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039716-4|AAB96739.1|  616|Caenorhabditis elegans Aminopeptidas...   138   4e-33
AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical ...   112   3e-25
AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical...    31   0.82 

>AF039716-4|AAB96739.1|  616|Caenorhabditis elegans Aminopeptidase p
            protein 1 protein.
          Length = 616

 Score =  138 bits (334), Expect = 4e-33
 Identities = 87/216 (40%), Positives = 113/216 (52%)
 Frame = -3

Query: 713  SGGQYRDGTTDITRTRHMSGNPTAEQRDAFTRVLKGQIMIGSALFPKGVKGNVLDSFARH 534
            SG  Y DGTTD+TRT   + NP  E     T VLKG I +  A FP G+ G+ LD+  R 
Sbjct: 414  SGAHYGDGTTDVTRTVWYT-NPPKEFILHNTLVLKGHINLARAKFPDGIYGSRLDTLTRD 472

Query: 533  ALWEXXXXXXXXXXXXXXXXLNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYKVGEYG 354
            ALW+                LNVHEGP G+  R  P    L+  Q+L+ EPGFY   +YG
Sbjct: 473  ALWKLGLDFEHGTGHGVGHYLNVHEGPIGIGHRSVPTGGELHASQVLTIEPGFYAKEKYG 532

Query: 353  IRHEDLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEIS 174
            IR E+  E V     S   KA+N          L F +LTLVP Q   +D  +L + EI+
Sbjct: 533  IRIENCYETVEAVVMS---KAQNF---------LTFKSLTLVPIQTSIVDKSLLIEEEIN 580

Query: 173  YVNAYHRRVLDTLSPILKERGLLKDLEWLEGQCIPI 66
            ++N YH RVL  +   L++RG   +L+WL   C PI
Sbjct: 581  WLNQYHARVLKEVGEHLQKRGKTDELKWLAEACKPI 616


>AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical
            protein Y45G5AM.2 protein.
          Length = 1061

 Score =  112 bits (269), Expect = 3e-25
 Identities = 71/217 (32%), Positives = 107/217 (49%), Gaps = 1/217 (0%)
 Frame = -3

Query: 713  SGGQYRDGTTDITRTRHMSGNPTAEQRDAFTRVLKGQIMIGSALFPKGVK-GNVLDSFAR 537
            +G  Y DG T+  RT   S  PT E  + +T VLKG I + SA FPK +  G+ LD FAR
Sbjct: 858  TGSHYTDGATNCARTIWDS-YPTEEFMNQYTLVLKGHIRLASASFPKTLTYGSRLDIFAR 916

Query: 536  HALWEXXXXXXXXXXXXXXXXLNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYKVGEY 357
             ALW+                LN+ +    +   PY  +  +  GQ+++ EPG+Y  G Y
Sbjct: 917  IALWDAGLDYDHETGHSVGHFLNIRDTQIVIGREPYSSNSIIEAGQVMTIEPGYYSEGMY 976

Query: 356  GIRHEDLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEI 177
            GIR  +  E V V                + +  L F  LTL+P Q   ++ ++LT  EI
Sbjct: 977  GIRIGNCYETVDVTLSQ------------NDQYFLRFEPLTLIPIQTSIVNKDLLTSEEI 1024

Query: 176  SYVNAYHRRVLDTLSPILKERGLLKDLEWLEGQCIPI 66
            +++N YH +V   +  IL++   +++ +WL   C PI
Sbjct: 1025 NWLNKYHFKVFSKIGYILRKENRMEEYDWLFNACQPI 1061


>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
            protein Y47D3A.29 protein.
          Length = 1428

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 371  KVGEYGIRHEDLIEIVAVDKGSDHP 297
            K G++ +RH D++E V  + G+D+P
Sbjct: 1128 KSGKFNLRHNDIVEYVICEDGTDNP 1152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,822,174
Number of Sequences: 27780
Number of extensions: 320381
Number of successful extensions: 982
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)