Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14e03
(689 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-1753|AAF54983.1| 776|Drosophila melanogaster CG14366-P... 31 1.5
AY069478-1|AAL39623.1| 536|Drosophila melanogaster LD21616p pro... 30 2.6
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 30 2.6
AE013599-3404|AAF46853.2| 2733|Drosophila melanogaster CG4554-PA... 30 2.6
AE013599-1766|AAF58334.1| 536|Drosophila melanogaster CG6315-PA... 30 2.6
AY971884-1|AAX73355.1| 1518|Drosophila melanogaster hormone rece... 30 3.4
AL035245-2|CAA22836.1| 1464|Drosophila melanogaster EG:133E12.2 ... 30 3.4
AE014298-306|ABC67166.1| 1518|Drosophila melanogaster CG16902-PC... 30 3.4
AF221715-1|AAF34661.1| 5554|Drosophila melanogaster split ends l... 29 4.5
AF188205-1|AAF13218.1| 5533|Drosophila melanogaster Spen RNP mot... 29 4.5
AF184612-1|AAF26299.1| 5476|Drosophila melanogaster split ends p... 29 4.5
AE014134-58|AAN10511.1| 5476|Drosophila melanogaster CG18497-PC,... 29 4.5
AE014134-57|AAF51534.2| 5533|Drosophila melanogaster CG18497-PB,... 29 4.5
AE014134-56|AAF51535.2| 5560|Drosophila melanogaster CG18497-PA,... 29 4.5
U42403-1|AAB02355.1| 1180|Drosophila melanogaster stripe a prote... 29 7.9
U42402-1|AAB02354.1| 906|Drosophila melanogaster stripe b prote... 29 7.9
BT001323-1|AAN71078.1| 495|Drosophila melanogaster AT16616p pro... 29 7.9
AY094744-1|AAM11097.1| 790|Drosophila melanogaster GM01751p pro... 29 7.9
AE014297-2438|AAN13756.1| 906|Drosophila melanogaster CG7847-PB... 29 7.9
AE014297-2437|AAF55492.1| 1186|Drosophila melanogaster CG7847-PA... 29 7.9
AE014296-172|AAF47439.2| 977|Drosophila melanogaster CG9097-PB,... 29 7.9
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P... 29 7.9
>AE014297-1753|AAF54983.1| 776|Drosophila melanogaster CG14366-PA
protein.
Length = 776
Score = 31.1 bits (67), Expect = 1.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 317 AGPQPETIGF*RRHP*QRLRAQLHERAKQSKGSHTAQQVQSQAQPHH 177
+ P PE ++HP +RL + + +Q + + QQ Q Q Q HH
Sbjct: 547 SSPSPEHNEQQQQHPSRRLMSPTQQLYQQQQHQRSQQQQQQQPQQHH 593
>AY069478-1|AAL39623.1| 536|Drosophila melanogaster LD21616p
protein.
Length = 536
Score = 30.3 bits (65), Expect = 2.6
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = -1
Query: 278 HP*QRLRAQLHERAKQSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAH 99
HP ++ +Q + H QQ Q Q Q H A A +R RL D N
Sbjct: 61 HPHPHHHHHQEQQQQQQQQQHLQQQQQQQQQQHAAAVAEAVAAAEQRQRLLEDEIENLKL 120
Query: 98 EQ 93
EQ
Sbjct: 121 EQ 122
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 30.3 bits (65), Expect = 2.6
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +3
Query: 447 SCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCVRSSILAITSFV 626
SC +++ + S RAVS + +I +SD A A S + ++ ++ LA +
Sbjct: 782 SCVSTKKTYLDSARAVSRTMALRLIRGFRTISDDAAHALSGITPIDLDIKGKYLASEGYT 841
Query: 627 SI 632
+
Sbjct: 842 QL 843
>AE013599-3404|AAF46853.2| 2733|Drosophila melanogaster CG4554-PA
protein.
Length = 2733
Score = 30.3 bits (65), Expect = 2.6
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Frame = -2
Query: 616 VIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANR 437
V+A++ + + + A E N L+ + + +VA + CE+ + Q+
Sbjct: 2078 VVARMFQILKNFSTFGATRQEENAQLVRASFKAVVA------LLRKCEDYQLSNEQIEQL 2131
Query: 436 MADIAQDVI-AKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVILSSDY 260
+ I Q++ + S+ + +L VG + RSL +KRLG +I SSDY
Sbjct: 2132 LLHIEQELQEGECSSQTMVFTLLKALVGR------KVDSRSLHDLMKRLGDLSIISSSDY 2185
Query: 259 V 257
V
Sbjct: 2186 V 2186
>AE013599-1766|AAF58334.1| 536|Drosophila melanogaster CG6315-PA,
isoform A protein.
Length = 536
Score = 30.3 bits (65), Expect = 2.6
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = -1
Query: 278 HP*QRLRAQLHERAKQSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAH 99
HP ++ +Q + H QQ Q Q Q H A A +R RL D N
Sbjct: 61 HPHPHHHHHQEQQQQQQQQQHLQQQQQQQQQQHAAAVAEAVAAAEQRQRLLEDEIENLKL 120
Query: 98 EQ 93
EQ
Sbjct: 121 EQ 122
>AY971884-1|AAX73355.1| 1518|Drosophila melanogaster hormone receptor
4 protein.
Length = 1518
Score = 29.9 bits (64), Expect = 3.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 284 RRHP*QRLRAQLHERAKQSKGSHTAQQV-QSQAQPHHV 174
++H Q+L + LH Q SH AQQ Q PHH+
Sbjct: 1051 QQHQQQQLHSPLHHHHHQGHQSHHAQQQHHPQLSPHHL 1088
>AL035245-2|CAA22836.1| 1464|Drosophila melanogaster EG:133E12.2
protein.
Length = 1464
Score = 29.9 bits (64), Expect = 3.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 284 RRHP*QRLRAQLHERAKQSKGSHTAQQV-QSQAQPHHV 174
++H Q+L + LH Q SH AQQ Q PHH+
Sbjct: 996 QQHQQQQLHSPLHHHHHQGHQSHHAQQQHHPQLSPHHL 1033
>AE014298-306|ABC67166.1| 1518|Drosophila melanogaster CG16902-PC
protein.
Length = 1518
Score = 29.9 bits (64), Expect = 3.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 284 RRHP*QRLRAQLHERAKQSKGSHTAQQV-QSQAQPHHV 174
++H Q+L + LH Q SH AQQ Q PHH+
Sbjct: 1051 QQHQQQQLHSPLHHHHHQGHQSHHAQQQHHPQLSPHHL 1088
>AF221715-1|AAF34661.1| 5554|Drosophila melanogaster split ends long
isoform protein.
Length = 5554
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 284 RRHP*QRLRAQLHERAKQSKGSHTA-QQVQSQAQPHHVAGRLHARGANERDRLHYDRPTN 108
+ H Q L QLH + ++ H A QQ Q Q H + + N+ + H + +
Sbjct: 3873 QHHNQQHLNQQLHAQQHPTQKQHQAQQQFNQQIQQHQSQQQHQVQQQNQAQQQHLSQQQH 3932
Query: 107 CAHEQFAQR 81
+ +Q Q+
Sbjct: 3933 QSQQQLNQQ 3941
>AF188205-1|AAF13218.1| 5533|Drosophila melanogaster Spen RNP motif
protein long isoformprotein.
Length = 5533
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 284 RRHP*QRLRAQLHERAKQSKGSHTA-QQVQSQAQPHHVAGRLHARGANERDRLHYDRPTN 108
+ H Q L QLH + ++ H A QQ Q Q H + + N+ + H + +
Sbjct: 3879 QHHNQQHLNQQLHAQQHPTQKQHQAQQQFNQQIQQHQSQQQHQVQQQNQAQQQHLSQQQH 3938
Query: 107 CAHEQFAQR 81
+ +Q Q+
Sbjct: 3939 QSQQQLNQQ 3947
>AF184612-1|AAF26299.1| 5476|Drosophila melanogaster split ends
protein.
Length = 5476
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 284 RRHP*QRLRAQLHERAKQSKGSHTA-QQVQSQAQPHHVAGRLHARGANERDRLHYDRPTN 108
+ H Q L QLH + ++ H A QQ Q Q H + + N+ + H + +
Sbjct: 3822 QHHNQQHLNQQLHAQQHPTQKQHQAQQQFNQQIQQHQSQQQHQVQQQNQAQQQHLSQQQH 3881
Query: 107 CAHEQFAQR 81
+ +Q Q+
Sbjct: 3882 QSQQQLNQQ 3890
>AE014134-58|AAN10511.1| 5476|Drosophila melanogaster CG18497-PC,
isoform C protein.
Length = 5476
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 284 RRHP*QRLRAQLHERAKQSKGSHTA-QQVQSQAQPHHVAGRLHARGANERDRLHYDRPTN 108
+ H Q L QLH + ++ H A QQ Q Q H + + N+ + H + +
Sbjct: 3822 QHHNQQHLNQQLHAQQHPTQKQHQAQQQFNQQIQQHQSQQQHQVQQQNQAQQQHLSQQQH 3881
Query: 107 CAHEQFAQR 81
+ +Q Q+
Sbjct: 3882 QSQQQLNQQ 3890
>AE014134-57|AAF51534.2| 5533|Drosophila melanogaster CG18497-PB,
isoform B protein.
Length = 5533
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 284 RRHP*QRLRAQLHERAKQSKGSHTA-QQVQSQAQPHHVAGRLHARGANERDRLHYDRPTN 108
+ H Q L QLH + ++ H A QQ Q Q H + + N+ + H + +
Sbjct: 3879 QHHNQQHLNQQLHAQQHPTQKQHQAQQQFNQQIQQHQSQQQHQVQQQNQAQQQHLSQQQH 3938
Query: 107 CAHEQFAQR 81
+ +Q Q+
Sbjct: 3939 QSQQQLNQQ 3947
>AE014134-56|AAF51535.2| 5560|Drosophila melanogaster CG18497-PA,
isoform A protein.
Length = 5560
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 284 RRHP*QRLRAQLHERAKQSKGSHTA-QQVQSQAQPHHVAGRLHARGANERDRLHYDRPTN 108
+ H Q L QLH + ++ H A QQ Q Q H + + N+ + H + +
Sbjct: 3879 QHHNQQHLNQQLHAQQHPTQKQHQAQQQFNQQIQQHQSQQQHQVQQQNQAQQQHLSQQQH 3938
Query: 107 CAHEQFAQR 81
+ +Q Q+
Sbjct: 3939 QSQQQLNQQ 3947
>U42403-1|AAB02355.1| 1180|Drosophila melanogaster stripe a protein
protein.
Length = 1180
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 233 QSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKI 69
Q + QQ Q Q QP H +L + + + HY + H+Q Q+A KI
Sbjct: 657 QQQQQQQQQQQQHQQQPLHQQQQLQHQQQQQHHQQHYQQHA-IQHQQSQQQASKI 710
>U42402-1|AAB02354.1| 906|Drosophila melanogaster stripe b protein
protein.
Length = 906
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 233 QSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKI 69
Q + QQ Q Q QP H +L + + + HY + H+Q Q+A KI
Sbjct: 383 QQQQQQQQQQQQHQQQPLHQQQQLQHQQQQQHHQQHYQQHA-IQHQQSQQQASKI 436
>BT001323-1|AAN71078.1| 495|Drosophila melanogaster AT16616p
protein.
Length = 495
Score = 28.7 bits (61), Expect = 7.9
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = -1
Query: 245 ERAKQSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKIF 66
+R + KG +QQ + H+ G+L +R+R D P +H QR+IK F
Sbjct: 7 KRLDEVKGEEKSQQDYAD----HINGKLDEASLRKRNRREEDSP---SHNAKKQRSIKEF 59
Query: 65 ICRQAFKHWVTS 30
+ + K TS
Sbjct: 60 LTPKKSKQGQTS 71
>AY094744-1|AAM11097.1| 790|Drosophila melanogaster GM01751p
protein.
Length = 790
Score = 28.7 bits (61), Expect = 7.9
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Frame = -2
Query: 616 VIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANR 437
V+ ++ + + + A E N L+ + + +VA + CE+ + Q+
Sbjct: 135 VVTRMFQILKNFSTFGATRQEENAQLVRASFKAVVA------LLRKCEDYQLSNEQIEQL 188
Query: 436 MADIAQDVI-AKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVILSSDY 260
+ I Q++ + S+ + +L VG + RSL +KRLG +I SSDY
Sbjct: 189 LLHIEQELQEGECSSQTMVFTLLKALVGR------KVDSRSLHDLMKRLGDLSIISSSDY 242
Query: 259 V 257
V
Sbjct: 243 V 243
>AE014297-2438|AAN13756.1| 906|Drosophila melanogaster CG7847-PB,
isoform B protein.
Length = 906
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 233 QSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKI 69
Q + QQ Q Q QP H +L + + + HY + H+Q Q+A KI
Sbjct: 383 QQQQQQQQQQQQHQQQPLHQQQQLQHQQQQQHHQQHYQQHA-IQHQQSQQQASKI 436
>AE014297-2437|AAF55492.1| 1186|Drosophila melanogaster CG7847-PA,
isoform A protein.
Length = 1186
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 233 QSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKI 69
Q + QQ Q Q QP H +L + + + HY + H+Q Q+A KI
Sbjct: 663 QQQQQQQQQQQQHQQQPLHQQQQLQHQQQQQHHQQHYQQHA-IQHQQSQQQASKI 716
>AE014296-172|AAF47439.2| 977|Drosophila melanogaster CG9097-PB,
isoform B protein.
Length = 977
Score = 28.7 bits (61), Expect = 7.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 254 QLHERAKQSKGSHTAQQVQSQAQPHHVAG 168
QLH + +Q+ H QQ Q Q Q HH G
Sbjct: 823 QLHLQQQQAHLHHHQQQQQQQQQQHHQGG 851
>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
protein.
Length = 23015
Score = 28.7 bits (61), Expect = 7.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 420 CAMSAMRLASCAVSRRAFSQSCRAV 494
C + + ASCAV R + Q CR V
Sbjct: 2148 CNLPCTKTASCAVGERCYQQVCRKV 2172
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,546,344
Number of Sequences: 53049
Number of extensions: 676007
Number of successful extensions: 3015
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3008
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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