Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d22
         (587 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22EI9 Cluster: Putative uncharacterized protein; n=1; ...    37   0.40 
UniRef50_A0NKA6 Cluster: Permease, major facilitator superfamily...    33   3.7  
UniRef50_Q5AGZ5 Cluster: Putative uncharacterized protein; n=1; ...    33   3.7  
UniRef50_A3LP80 Cluster: Predicted E3 ubiquitin ligase; n=1; Pic...    33   3.7  
UniRef50_Q55BN2 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  
UniRef50_A0CX97 Cluster: Chromosome undetermined scaffold_3, who...    33   6.5  

>UniRef50_Q22EI9 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2192

 Score = 36.7 bits (81), Expect = 0.40
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -1

Query: 350 CILSSNVIFYQIFGLVLFKCLLCLDYFHSLESSILYCKLICSKLIS-FKCSNCVFNLRSL 174
           C L  N    + FG  + +C  C+D ++    S L C+  C K  S   C NC+ N    
Sbjct: 609 CQLICNSACLKCFGNSVNQCFQCIDGYYLQGYSCLQCQAPCLKCSSQVTCLNCISNYTYN 668

Query: 173 CISKICN 153
            +S+ C+
Sbjct: 669 SVSQTCS 675


>UniRef50_A0NKA6 Cluster: Permease, major facilitator superfamily;
           n=1; Oenococcus oeni ATCC BAA-1163|Rep: Permease, major
           facilitator superfamily - Oenococcus oeni ATCC BAA-1163
          Length = 430

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -1

Query: 329 IFYQIFGLVLFKCLLCLDYFHSLESSILYCKLICSKLISFKCSNCVFNLRSLCISKICNI 150
           IF ++F L++F C +  DYFH L   +     +    IS   SN  +   S  I ++ N 
Sbjct: 93  IFIRLFALIIFACFI--DYFHGLSKLVPVIIFLIINAISINFSNTSY---SAAIHELVNG 147

Query: 149 KK 144
           KK
Sbjct: 148 KK 149


>UniRef50_Q5AGZ5 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 161

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 403 KCCDICIW-NIYIISLNCHVFFHPMSSFIKFLG*FYSN 293
           +CCDI  +  +  ++ N H +FHP SS   FL   +SN
Sbjct: 49  RCCDISNFLTVLFVAKNSHKYFHPNSSMETFLNDNFSN 86


>UniRef50_A3LP80 Cluster: Predicted E3 ubiquitin ligase; n=1; Pichia
           stipitis|Rep: Predicted E3 ubiquitin ligase - Pichia
           stipitis (Yeast)
          Length = 468

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -1

Query: 299 FKCLLCLDYFHSLESSILYCKLICSKLISFKC-SNCVFNLRSLCISKICNIKKKRGSE*Y 123
           +KC +CL+ +  L+S +L   L C  +   +C SN + N R  C   +CN+     +E Y
Sbjct: 387 YKCSICLEKYSPLKSRVLV--LDCKHIYHERCLSNWLINFRRSC--PLCNVMINPSTEPY 442


>UniRef50_Q55BN2 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 954

 Score = 32.7 bits (71), Expect = 6.5
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 305 VLFKCLLCLDYFHSLESSILYCKLICSKLIS-FKCSNCVFNLRSLCISKICNIKKKRGSE 129
           +L KC+ CL+    +E  I   K I  K +S  KC +C  +L       + +IK+    E
Sbjct: 408 LLIKCIDCLNIITDIEKVIFLDKRIDEKRVSKIKCKSCKISL------SVYDIKQVLTDE 461

Query: 128 *YSIY 114
            YSIY
Sbjct: 462 EYSIY 466


>UniRef50_A0CX97 Cluster: Chromosome undetermined scaffold_3, whole
           genome shotgun sequence; n=2; Oligohymenophorea|Rep:
           Chromosome undetermined scaffold_3, whole genome shotgun
           sequence - Paramecium tetraurelia
          Length = 2724

 Score = 32.7 bits (71), Expect = 6.5
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 278 DYFHSLESSILYCKLICS-KLISFKCSNCVFN 186
           DY +  E SI +C LIC   LI  +CS C+FN
Sbjct: 583 DYLNCYECSIPFC-LICEVTLIGQRCSKCIFN 613


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 442,018,969
Number of Sequences: 1657284
Number of extensions: 7316674
Number of successful extensions: 14976
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14965
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 40658285374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)