Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d22
         (587 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   1.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.5  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   4.4  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   4.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   5.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   5.8  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   5.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.7  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -1

Query: 365  FIKLSCILSSNVIFYQIFGLVLFKCL-LCLDYFHSLESSILYC-KLICSKLISFKCSNCV 192
            F K +  +   +I  QIFGL+ F C   C        S I  C  ++ + +  F C  CV
Sbjct: 1087 FSKFTSSIRMLLIQGQIFGLITFGCSNRCF-----FPSKIRICWNVLLNCVYLFLCGFCV 1141

Query: 191  FNLRS 177
            +   S
Sbjct: 1142 YEFAS 1146


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 400 CCDICIWNIYIISLNCHVFFHPMSSFIKFLG*FYS 296
           CC    +N++++ L C  +F     F+  +  FYS
Sbjct: 183 CCAFIFFNMHLLFLLCLDYFTLHLLFLPCIYYFYS 217


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 353 SCILSSNVIFYQIFGLVLFKC 291
           +C+L  + + Y + G   FKC
Sbjct: 5   ACLLVLSALIYSVLGQENFKC 25


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 353 SCILSSNVIFYQIFGLVLFKC 291
           +C+L  + + Y + G   FKC
Sbjct: 5   ACLLVLSALIYSVLGQENFKC 25


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 394 DICIWNIYIISLNCHVFFHP 335
           ++ IWN    ++  HV+ HP
Sbjct: 528 EVNIWNPLTDTIPIHVWIHP 547


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 166 LIHKLRRLKTQFEHLNEINLEHI 234
           LIH+L   + ++EH +E +++ I
Sbjct: 318 LIHRLVYFQNEYEHPSEEDVKRI 340


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 187 IFGAYVLVKFAILK 146
           IFGA+V+  F ILK
Sbjct: 75  IFGAFVMGLFCILK 88


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 494 EKWNRSSSHFAXFKRL 541
           E+WN S  H    KRL
Sbjct: 216 EQWNHSKVHIREDKRL 231


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,849
Number of Sequences: 336
Number of extensions: 2406
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)