Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d22
         (587 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC071937-1|AAH71937.1|  312|Homo sapiens zinc finger protein 414...    31   2.3  
BC007310-1|AAH07310.1|  312|Homo sapiens zinc finger protein 414...    31   2.3  
BC113413-1|AAI13414.1|  315|Homo sapiens rabphilin 3A-like (with...    31   4.0  
BC093776-1|AAH93776.1|  315|Homo sapiens rabphilin 3A-like (with...    31   4.0  
AK000469-1|BAA91186.1|  315|Homo sapiens protein ( Homo sapiens ...    31   4.0  
AF129812-1|AAD45582.1|  315|Homo sapiens candidate tumor suppres...    31   4.0  
AK126902-1|BAC86743.1|  247|Homo sapiens protein ( Homo sapiens ...    30   7.0  

>BC071937-1|AAH71937.1|  312|Homo sapiens zinc finger protein 414
           protein.
          Length = 312

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 302 LFKC--LLCLDYFHSLESSILYCKLICSKLISFKCSNCVFNLRS 177
           LF+C  L C + F S++  + + KL       FKC NC+   R+
Sbjct: 144 LFRCSALSCTETFPSMQELVAHSKLHYKPNRYFKCENCLLRFRT 187


>BC007310-1|AAH07310.1|  312|Homo sapiens zinc finger protein 414
           protein.
          Length = 312

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 302 LFKC--LLCLDYFHSLESSILYCKLICSKLISFKCSNCVFNLRS 177
           LF+C  L C + F S++  + + KL       FKC NC+   R+
Sbjct: 144 LFRCSALSCTETFPSMQELVAHSKLHYKPNRYFKCENCLLRFRT 187


>BC113413-1|AAI13414.1|  315|Homo sapiens rabphilin 3A-like (without
           C2 domains) protein.
          Length = 315

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 317 IFGLVLFKCLLCLDYFHSLESSILYCKLICSKLISFKC--SNCVFNLRSLCISKICNIKK 144
           + G  L +CLLC +    L SS ++CK  C K +  KC         R L + KIC+ ++
Sbjct: 87  VMGNGLSQCLLCGEVLGFLGSSSVFCK-DCRKKVCTKCGIEASPGQKRPLWLCKICSEQR 145

Query: 143 K 141
           +
Sbjct: 146 E 146


>BC093776-1|AAH93776.1|  315|Homo sapiens rabphilin 3A-like (without
           C2 domains) protein.
          Length = 315

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 317 IFGLVLFKCLLCLDYFHSLESSILYCKLICSKLISFKC--SNCVFNLRSLCISKICNIKK 144
           + G  L +CLLC +    L SS ++CK  C K +  KC         R L + KIC+ ++
Sbjct: 87  VMGNGLSQCLLCGEVLGFLGSSSVFCK-DCRKKVCTKCGIEASPGQKRPLWLCKICSEQR 145

Query: 143 K 141
           +
Sbjct: 146 E 146


>AK000469-1|BAA91186.1|  315|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20462 fis, clone KAT06107. ).
          Length = 315

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 317 IFGLVLFKCLLCLDYFHSLESSILYCKLICSKLISFKC--SNCVFNLRSLCISKICNIKK 144
           + G  L +CLLC +    L SS ++CK  C K +  KC         R L + KIC+ ++
Sbjct: 87  VMGNGLSQCLLCGEVLGFLGSSSVFCK-DCRKKVCTKCGIEASPGQKRPLWLCKICSEQR 145

Query: 143 K 141
           +
Sbjct: 146 E 146


>AF129812-1|AAD45582.1|  315|Homo sapiens candidate tumor suppressor
           protein NOC2 protein.
          Length = 315

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 317 IFGLVLFKCLLCLDYFHSLESSILYCKLICSKLISFKC--SNCVFNLRSLCISKICNIKK 144
           + G  L +CLLC +    L SS ++CK  C K +  KC         R L + KIC+ ++
Sbjct: 87  VMGNGLSQCLLCGEVLGFLGSSSVFCK-DCRKKVCTKCGIEASPGQKRPLWLCKICSEQR 145

Query: 143 K 141
           +
Sbjct: 146 E 146


>AK126902-1|BAC86743.1|  247|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44954 fis, clone BRAWH2010364. ).
          Length = 247

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 17/44 (38%), Positives = 18/44 (40%)
 Frame = -1

Query: 296 KCLLCLDYFHSLESSILYCKLICSKLISFKCSNCVFNLRSLCIS 165
           +C  C    H      L C L CS   S  CS C F  RS C S
Sbjct: 109 RCSPCCS-LHCSPCCSLQCSLHCSPHCSLHCSPCCFLHRSPCCS 151


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,108,340
Number of Sequences: 237096
Number of extensions: 1096497
Number of successful extensions: 5293
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5293
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)