Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d22
         (587 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069723-1|AAL39868.1|  492|Drosophila melanogaster LP02895p pro...    31   0.88 
AE014296-1|AAF47322.2|  492|Drosophila melanogaster CG32475-PA p...    31   0.88 
BT003467-1|AAO39470.1|  640|Drosophila melanogaster RE70810p pro...    28   8.2  
AE014296-2127|AAF49930.2|  640|Drosophila melanogaster CG32105-P...    28   8.2  
AE014134-2428|AAF53354.1|  611|Drosophila melanogaster CG16869-P...    28   8.2  

>AY069723-1|AAL39868.1|  492|Drosophila melanogaster LP02895p
           protein.
          Length = 492

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -2

Query: 304 FYSNAFYA*IIFIVWKAASFTVNLYVPN*SHLNAQIAFLIFGAYVLVKFAILKKNEAVNN 125
           F+    Y  ++++V    SF  N Y  N SHLN  ++F +        +A++ KN+ + N
Sbjct: 412 FWKYFGYTAVVWVVC-ICSFAFNYYWENRSHLNYAVSFCMAFHGFAALYALIGKNQQIQN 470


>AE014296-1|AAF47322.2|  492|Drosophila melanogaster CG32475-PA
           protein.
          Length = 492

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -2

Query: 304 FYSNAFYA*IIFIVWKAASFTVNLYVPN*SHLNAQIAFLIFGAYVLVKFAILKKNEAVNN 125
           F+    Y  ++++V    SF  N Y  N SHLN  ++F +        +A++ KN+ + N
Sbjct: 412 FWKYFGYTAVVWVVC-ICSFAFNYYWENRSHLNYAVSFCMAFHGFAALYALIGKNQQIQN 470


>BT003467-1|AAO39470.1|  640|Drosophila melanogaster RE70810p
           protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 293 CLLCLDYFHSLESSILYCKLICSKLISFKCSNC 195
           C + L +   + +S LYCK+   +L   KCS+C
Sbjct: 305 CGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSC 337


>AE014296-2127|AAF49930.2|  640|Drosophila melanogaster CG32105-PB
           protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 293 CLLCLDYFHSLESSILYCKLICSKLISFKCSNC 195
           C + L +   + +S LYCK+   +L   KCS+C
Sbjct: 305 CGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSC 337


>AE014134-2428|AAF53354.1|  611|Drosophila melanogaster CG16869-PA
           protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 173 ISSED*KRNLSI*MRSIWNI*VYSKGCCFPNYENNL 280
           I+ E  +R LS   R  WN+  Y +   FP  EN+L
Sbjct: 290 ITQELHRRGLSTTQRVFWNVAEYFRALGFPQLENSL 325


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,560,601
Number of Sequences: 53049
Number of extensions: 327893
Number of successful extensions: 654
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2358819486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)