Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14d22
(587 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80028-10|AAN73868.2| 376|Caenorhabditis elegans Serpentine rec... 31 0.80
U42844-4|ABM01868.1| 739|Caenorhabditis elegans Hypothetical pr... 29 1.9
AF038606-8|AAB92022.2| 313|Caenorhabditis elegans Serpentine re... 29 2.4
Z81034-1|CAB02726.1| 194|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z68300-2|CAA92616.2| 440|Caenorhabditis elegans Hypothetical pr... 28 5.7
U01918-1|AAA85278.1| 359|Caenorhabditis elegans dpy-20 protein. 28 5.7
U80445-10|AAB37800.1| 141|Caenorhabditis elegans Hypothetical p... 27 7.5
U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical pr... 27 7.5
AF047662-7|AAC04439.1| 955|Caenorhabditis elegans Hypothetical ... 27 9.9
AF016681-4|AAB66174.2| 276|Caenorhabditis elegans Hypothetical ... 27 9.9
>U80028-10|AAN73868.2| 376|Caenorhabditis elegans Serpentine
receptor, class w protein139 protein.
Length = 376
Score = 30.7 bits (66), Expect = 0.80
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 64 AALQTKL*SNCYISNIL*MEYYSLPRFFLILQILLIHKLRR 186
A L+ +N ++NI+ Y + FFL+ Q+LL++K RR
Sbjct: 217 ALLKIATTTNAIVTNIIPCFLYPIFTFFLVTQLLLVNKNRR 257
>U42844-4|ABM01868.1| 739|Caenorhabditis elegans Hypothetical
protein C08A9.3 protein.
Length = 739
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -1
Query: 335 NVIFYQIFGLVLFKCLLCLDYFHSLES-SILYCKLICS-KLISFKCSNCVFNLRSLCISK 162
N +F+QIFG +L D + + + Y +CS + + FK N + + SL +
Sbjct: 355 NFLFFQIFGSILPSLTTLFDKQKTSNNLNFCYLNFLCSLEFLCFKSFNSMTSASSLAVIG 414
Query: 161 ICNI 150
+ N+
Sbjct: 415 VLNL 418
>AF038606-8|AAB92022.2| 313|Caenorhabditis elegans Serpentine
receptor, class z protein60 protein.
Length = 313
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 199 IAFLIFGAYVLVKFAILKKNEAVNNIPFTKY 107
I FL+F YV V A K+++AV PFTK+
Sbjct: 31 IYFLLFPFYVYVNKANRKRDQAVLIYPFTKH 61
>Z81034-1|CAB02726.1| 194|Caenorhabditis elegans Hypothetical
protein C15C6.1 protein.
Length = 194
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -3
Query: 351 MYSFIQCHLLSNFWASFIQMPFMLRLFS 268
MY+F+ C +L N W + + + ++ +FS
Sbjct: 144 MYTFLTCFMLFNAWQAHVGIHYIEHIFS 171
>Z68300-2|CAA92616.2| 440|Caenorhabditis elegans Hypothetical
protein T22B3.1 protein.
Length = 440
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -1
Query: 284 CLDYFHSLESSILYCKLICSKLISFKCS 201
C YFH ++ ++ C+L C+K++ C+
Sbjct: 142 CWAYFHRIDDQLVKCRL-CTKVVRSACA 168
>U01918-1|AAA85278.1| 359|Caenorhabditis elegans dpy-20 protein.
Length = 359
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -1
Query: 284 CLDYFHSLESSILYCKLICSKLISFKCS 201
C YFH ++ ++ C+L C+K++ C+
Sbjct: 142 CWAYFHRIDDQLVKCRL-CTKVVRSACA 168
>U80445-10|AAB37800.1| 141|Caenorhabditis elegans Hypothetical
protein C50F2.7 protein.
Length = 141
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 199 IAFLIFGAYVLVKFAILKKNEAVNNIPFTKY 107
+AFLI G V V ++ NN+P+T Y
Sbjct: 110 VAFLIIGIAVFVLKFFCQRRTPGNNVPYTAY 140
>U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical
protein C28G1.5 protein.
Length = 101
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = -1
Query: 296 KCLLCLDYFHSLESSILYCKLICSKLISFKCSNCVFN 186
KC +C D F +S + L C + KC + N
Sbjct: 5 KCKICFDRFSDTDSEHIPRNLTCGHALCHKCITAMVN 41
>AF047662-7|AAC04439.1| 955|Caenorhabditis elegans Hypothetical
protein T22B2.1 protein.
Length = 955
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = -1
Query: 317 IFGLVLFKCLLCLDYFHSLESSILYCKLICSKLISFKCSNC 195
++G+V + CL + ++ +L+CS++ ++C C
Sbjct: 491 VYGIVEHLQIDCLARRFPKLAEFIHSQLVCSRIFGYQCQKC 531
>AF016681-4|AAB66174.2| 276|Caenorhabditis elegans Hypothetical
protein F22E5.8 protein.
Length = 276
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 275 YFHSLESSILYCKLICSKLISFKCSNCVFNLRSLCISKICNI 150
+F S SS +C L+ +I C C F S+C+ + I
Sbjct: 215 FFSSWLSSKNHCSLLDMCMIPIDCIVCPFQKISMCVPSLIRI 256
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,997,028
Number of Sequences: 27780
Number of extensions: 202145
Number of successful extensions: 457
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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