Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d22
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.73 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.9  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   3.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   3.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.0  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 349 VFFHPMSSFIKF 314
           +FFHPMSSF +F
Sbjct: 391 LFFHPMSSFREF 402


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 142 FFLILQILLIHKLRRLKTQFEHLNEINLEH 231
           FFL  Q+L  + L RL      ++ ++L+H
Sbjct: 259 FFLHKQVLNRYYLERLSNDMGEVSYVSLDH 288


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 142 FFLILQILLIHKLRRLKTQFEHLNEINLEH 231
           FFL  Q+L  + L RL      ++ ++L+H
Sbjct: 259 FFLHKQVLNRYYLERLSNDMGEVSYVSLDH 288


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 482 LILRKTLKILMYIMIRCN 429
           +IL  TL I+ Y+M+RC+
Sbjct: 5   VILLFTLCIVSYMMVRCD 22


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 314 FGLVLFKCLLCLDYFHSLESSILYCK 237
           +G  ++KC LC + F S ++  L+ K
Sbjct: 255 YGEKVYKCTLCHETFGSKKTMELHIK 280


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -1

Query: 236 LICSKLISFKCSNCVFNLRSLC---ISKICNIKK 144
           ++C   +SF   +C  ++ +LC   + + C I K
Sbjct: 112 IMCDLWVSFDVLSCTASILNLCMISVDRFCAITK 145


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 211 NEINLEHISLQ 243
           N++NLEH++ Q
Sbjct: 389 NDLNLEHVNFQ 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,853
Number of Sequences: 438
Number of extensions: 2337
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)