Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d20
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0644 + 18337757-18337947,18339113-18339344                       28   5.7  
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874...    28   5.7  
07_03_1766 + 29334576-29335790,29335865-29336362                       27   9.9  

>04_03_0644 + 18337757-18337947,18339113-18339344
          Length = 140

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 573 STTETFQRLRNKNLTTLN 520
           ++TE FQR+ N NLTT+N
Sbjct: 42  TSTERFQRMLNANLTTIN 59


>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
            26887942-26888055,26888132-26888228,26889115-26889235,
            26889306-26889390,26889494-26889643,26889871-26889987,
            26890123-26890221,26890439-26890495,26890581-26890664,
            26890759-26890828,26891015-26891169,26891557-26892095,
            26892327-26892393,26892436-26892984,26893574-26893768,
            26894485-26894569,26895822-26896441,26897154-26897486,
            26897552-26897616,26897868-26897955,26898250-26898331,
            26898720-26898796,26899152-26899256,26899496-26899630,
            26900199-26900888,26901474-26902261,26902990-26904673
          Length = 2825

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 651  TKTTQPPLSMSKKKTPTLLESISKKISTTETFQR 550
            T+T  PP +  +++  +LLE  S K+ T  +FQ+
Sbjct: 1682 TETIAPPTNKLRRRDTSLLERRSAKLHTFSSFQK 1715


>07_03_1766 + 29334576-29335790,29335865-29336362
          Length = 570

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 633 PLSMSKKKTPTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDD 472
           P  ++K       E ISK IS + T + L+N   T+   ++   E LL Y  DD
Sbjct: 73  PTDLAKAMFAVTSEKISKAISESSTLEELKNDKRTS-GALQNCKE-LLEYAVDD 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,320,253
Number of Sequences: 37544
Number of extensions: 193814
Number of successful extensions: 510
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)