Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d19
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0379 - 18352103-18352246,18352994-18353146,18353258-183533...    41   7e-04
12_01_0340 - 2605770-2605916,2606353-2606595,2607260-2607531,260...    31   0.56 
07_03_0112 + 13554337-13554463,13554559-13554953                       29   4.0  
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104...    29   4.0  
01_06_1416 - 37174913-37175006,37175299-37175441,37175932-371760...    28   5.2  

>12_02_0379 -
           18352103-18352246,18352994-18353146,18353258-18353375,
           18353785-18353792
          Length = 140

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 18/72 (25%), Positives = 39/72 (54%)
 Frame = -3

Query: 549 SLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQLI 370
           ++A    +   YL  T   NQ+ + I +F+   + +KLT  +KL ++N  P +  +   +
Sbjct: 35  AVAASECKVYEYLLKTPACNQTRESINEFVTRCESFKLTNADKLNVINWRPSSAADAYAM 94

Query: 369 VQESEERLSEED 334
           ++E  +R S+++
Sbjct: 95  IEECGKRFSKDE 106


>12_01_0340 -
           2605770-2605916,2606353-2606595,2607260-2607531,
           2607691-2607733,2607822-2607899,2608026-2608085,
           2608272-2608331,2609440-2609577,2609655-2609767,
           2610333-2610569,2610867-2610918
          Length = 480

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 239 NRRQERLHRLHYVLELSFASRCWLTI 316
           N RQ+ LH++H +L +  A+RC+L I
Sbjct: 435 NLRQQTLHQMHRILTIRQAARCFLAI 460


>07_03_0112 + 13554337-13554463,13554559-13554953
          Length = 173

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 149 FRLRVLTKYAILMQYLSLFKGISLHVGLF 235
           +RLRVL  + I++ +  L   + LH GLF
Sbjct: 116 WRLRVLEAFVIILAFTQLLYVLMLHTGLF 144


>01_06_1430 -
           37309737-37309946,37310049-37310100,37310348-37310427,
           37310538-37310606,37310710-37310843,37311173-37311332,
           37311483-37311554,37312113-37312246,37312386-37312521,
           37313273-37313416
          Length = 396

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = -3

Query: 450 KKYKLTKVEKLMMVNTPPRTELEIQLIVQESEERLSEEDVQDIISIVSQHL 298
           K+YK   +EKL  VN    +ELE +L   +SEE  + +  + I++++++ L
Sbjct: 303 KEYKGVNLEKLKFVNPDKFSELEAEL-TADSEE--ATKRFEHIVAVMNEEL 350


>01_06_1416 -
           37174913-37175006,37175299-37175441,37175932-37176027,
           37177125-37177364,37177456-37177812,37178020-37178097,
           37178387-37178434,37179406-37179675,37179954-37180054,
           37180452-37180605
          Length = 526

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 239 NRRQERLHRLHYVLELSFASRCWLTI 316
           N RQ+ LH+L  +L    A+RC+L+I
Sbjct: 451 NLRQQTLHQLRRILTTRQAARCFLSI 476


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,417,318
Number of Sequences: 37544
Number of extensions: 234450
Number of successful extensions: 472
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)