Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d19
         (623 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51134-1|AAD05036.1|  148|Homo sapiens calcitonin gene-related p...    91   4e-18
BC105808-1|AAI05809.1|  148|Homo sapiens calcitonin gene-related...    91   4e-18
AF073792-1|AAC25992.1|  148|Homo sapiens CGRP-receptor component...    91   4e-18
BC040107-1|AAH40107.1|  115|Homo sapiens calcitonin gene-related...    84   3e-16

>U51134-1|AAD05036.1|  148|Homo sapiens calcitonin gene-related
           peptide receptor component protein protein.
          Length = 148

 Score = 90.6 bits (215), Expect = 4e-18
 Identities = 41/88 (46%), Positives = 65/88 (73%)
 Frame = -3

Query: 555 EASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQ 376
           + +L T+TYET+ Y+  T C++QS + +++FL A+K +KLTK EKL ++N  P T +EIQ
Sbjct: 39  QQNLNTITYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQ 98

Query: 375 LIVQESEERLSEEDVQDIISIVSQHLLA 292
           L+V+ESEERL+EE ++ ++  V+  L A
Sbjct: 99  LMVEESEERLTEEQIEALLHTVTSILPA 126


>BC105808-1|AAI05809.1|  148|Homo sapiens calcitonin gene-related
           peptide-receptor component protein protein.
          Length = 148

 Score = 90.6 bits (215), Expect = 4e-18
 Identities = 41/88 (46%), Positives = 65/88 (73%)
 Frame = -3

Query: 555 EASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQ 376
           + +L T+TYET+ Y+  T C++QS + +++FL A+K +KLTK EKL ++N  P T +EIQ
Sbjct: 39  QQNLNTITYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQ 98

Query: 375 LIVQESEERLSEEDVQDIISIVSQHLLA 292
           L+V+ESEERL+EE ++ ++  V+  L A
Sbjct: 99  LMVEESEERLTEEQIEALLHTVTSILPA 126


>AF073792-1|AAC25992.1|  148|Homo sapiens CGRP-receptor component
           protein protein.
          Length = 148

 Score = 90.6 bits (215), Expect = 4e-18
 Identities = 41/88 (46%), Positives = 65/88 (73%)
 Frame = -3

Query: 555 EASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQ 376
           + +L T+TYET+ Y+  T C++QS + +++FL A+K +KLTK EKL ++N  P T +EIQ
Sbjct: 39  QQNLNTITYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQ 98

Query: 375 LIVQESEERLSEEDVQDIISIVSQHLLA 292
           L+V+ESEERL+EE ++ ++  V+  L A
Sbjct: 99  LMVEESEERLTEEQIEALLHTVTSILPA 126


>BC040107-1|AAH40107.1|  115|Homo sapiens calcitonin gene-related
           peptide-receptor component protein protein.
          Length = 115

 Score = 84.2 bits (199), Expect = 3e-16
 Identities = 40/90 (44%), Positives = 66/90 (73%), Gaps = 1/90 (1%)
 Frame = -3

Query: 558 REASLATVT-YETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPPRTELE 382
           ++A+ A ++ YET+ Y+  T C++QS + +++FL A+K +KLTK EKL ++N  P T +E
Sbjct: 4   KDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVE 63

Query: 381 IQLIVQESEERLSEEDVQDIISIVSQHLLA 292
           IQL+V+ESEERL+EE ++ ++  V+  L A
Sbjct: 64  IQLMVEESEERLTEEQIEALLHTVTSILPA 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,794,599
Number of Sequences: 237096
Number of extensions: 1452275
Number of successful extensions: 2645
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2645
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)