Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d19
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46935-6|CAL36509.1|  128|Caenorhabditis elegans Hypothetical pr...    65   4e-11
Z92782-11|CAE17813.1|  382|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z83127-6|CAB05633.1|  327|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z80214-6|CAB02266.1|  327|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPas...    28   4.7  
AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical ...    28   4.7  

>Z46935-6|CAL36509.1|  128|Caenorhabditis elegans Hypothetical
           protein M106.7 protein.
          Length = 128

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
 Frame = -3

Query: 546 LATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQLIV 367
           L+TV YET  YL  +    Q+   I + +  +  +KLT  E L ++N  P T  +IQL++
Sbjct: 39  LSTVIYETKKYLNTSPAVTQNEAVICELIPKLAPFKLTGAETLQVINLRPSTTADIQLLI 98

Query: 366 QESEERL-SEEDVQDIISIVSQHL 298
           +E+EER  SEED++ ++S VS+ L
Sbjct: 99  EETEERFPSEEDLEKLVSTVSECL 122


>Z92782-11|CAE17813.1|  382|Caenorhabditis elegans Hypothetical
           protein F14F8.11 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 58  LFFFIENLFCDTWCTQCIYWSPENPCQLLML*ITGS 165
           +F+F+ + +  T    C++W PEN   ++ + I+G+
Sbjct: 338 IFYFMSSEYRMTAKHMCLFWKPENSVSVINISISGN 373


>Z83127-6|CAB05633.1|  327|Caenorhabditis elegans Hypothetical
           protein C27D8.1 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 531 YETVHYLQDTECKNQSAQKIQKFLEAMKKYKL 436
           +  V+ +QD + K QSA K+++ +E  K  KL
Sbjct: 35  FGAVYLVQDNKSKKQSAMKVERKIEKRKHSKL 66


>Z80214-6|CAB02266.1|  327|Caenorhabditis elegans Hypothetical
           protein C27D8.1 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 531 YETVHYLQDTECKNQSAQKIQKFLEAMKKYKL 436
           +  V+ +QD + K QSA K+++ +E  K  KL
Sbjct: 35  FGAVYLVQDNKSKKQSAMKVERKIEKRKHSKL 66


>AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPase
            protein.
          Length = 1158

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 89   IHGARNVFIGLQKTPASCLCFRLRVLTKYAILMQY 193
            IHG RNVF G+   P  C+ + +  L  + +++Q+
Sbjct: 955  IHGERNVFKGIFTNPIFCVIW-ITTLISHILIVQF 988


>AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical
            protein R05C11.3 protein.
          Length = 1158

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 89   IHGARNVFIGLQKTPASCLCFRLRVLTKYAILMQY 193
            IHG RNVF G+   P  C+ + +  L  + +++Q+
Sbjct: 955  IHGERNVFKGIFTNPIFCVIW-ITTLISHILIVQF 988


>AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical
           protein T15B7.13 protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 501 LCLVSNVQSHM*QWQVKLLSYAFYVXLSFNFLENLHNFII 620
           LC  S+V  ++    +KLLS   Y+   +N+LEN  N  +
Sbjct: 112 LCNFSSVTLNLFDKMLKLLSEETYLRALYNYLENFLNLYV 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,467,696
Number of Sequences: 27780
Number of extensions: 242355
Number of successful extensions: 593
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)