Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14d16
(720 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 438 e-122
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 239 4e-62
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 198 1e-49
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 189 7e-47
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 183 3e-45
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 168 1e-40
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 157 2e-37
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 140 2e-32
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 127 3e-28
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 126 5e-28
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 123 5e-27
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 119 6e-26
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 118 1e-25
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 112 7e-24
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 108 2e-22
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 102 8e-21
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 99 5e-20
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 91 2e-17
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 85 2e-15
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 84 4e-15
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 75 1e-12
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 74 4e-12
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 73 5e-12
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 72 2e-11
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 60 4e-08
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 55 2e-06
UniRef50_A0EZZ8 Cluster: 60S ribosomal protein L6; n=5; Euteleos... 50 4e-05
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 48 2e-04
UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillar... 44 0.004
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 41 0.035
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.062
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 40 0.082
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 39 0.11
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 38 0.19
UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2; Lactoc... 36 1.0
UniRef50_Q66GS5 Cluster: At1g78120; n=2; Arabidopsis thaliana|Re... 34 3.1
UniRef50_Q06VE0 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 4.1
UniRef50_A0JCX9 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 5.4
UniRef50_A7E738 Cluster: Predicted protein; n=1; Sclerotinia scl... 33 5.4
UniRef50_Q6IMG0 Cluster: GRP21; n=11; Eukaryota|Rep: GRP21 - Ara... 33 7.1
UniRef50_Q2HF67 Cluster: Putative uncharacterized protein; n=2; ... 33 7.1
UniRef50_Q7NID4 Cluster: Gll2249 protein; n=8; Cyanobacteria|Rep... 33 9.4
UniRef50_Q5QLZ3 Cluster: Gastric mucin-like protein; n=4; Oryza ... 33 9.4
UniRef50_A1CF41 Cluster: Translation factor pelota, putative; n=... 33 9.4
UniRef50_Q8BTI8 Cluster: Serine/arginine repetitive matrix prote... 33 9.4
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 438 bits (1078), Expect = e-122
Identities = 215/239 (89%), Positives = 216/239 (90%)
Frame = -3
Query: 718 LGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTRTVPLKRRK 539
LGNGVMRFSKSKMFHKKAKYKFIG KLTVVVKQIGGEKNGGTRTVPLKRRK
Sbjct: 34 LGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGTRTVPLKRRK 93
Query: 538 SFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 359
SFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV
Sbjct: 94 SFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 153
Query: 358 TGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDD 179
TGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF KEGDD
Sbjct: 154 TGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFKKNKKCVKRTVKRKEGDD 213
Query: 178 IFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLRSSQYPHRLR 2
IFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKK+LRGYLKAAFGLRSSQYPHRLR
Sbjct: 214 IFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRLR 272
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 239 bits (586), Expect = 4e-62
Identities = 122/239 (51%), Positives = 154/239 (64%)
Frame = -3
Query: 718 LGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTRTVPLKRRK 539
L G++R+SK++M+ ++A Y+ VK+IGG KNGG RTV LK+ K
Sbjct: 26 LKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERTVFLKKSK 85
Query: 538 SFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 359
+ YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL+ +L SGLLLV
Sbjct: 86 ASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLV 145
Query: 358 TGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDD 179
TGPFA NSCPLRR+ QRYVIGTS+++ LG FK+P+H ND YF D
Sbjct: 146 TGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGEA---D 202
Query: 178 IFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLRSSQYPHRLR 2
IFA KKE++VP+EQRK DQK VD A++K I A P+ K YL+ F L SSQYPHR+R
Sbjct: 203 IFAAKKERFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFALHSSQYPHRMR 261
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 198 bits (483), Expect = 1e-49
Identities = 109/244 (44%), Positives = 146/244 (59%), Gaps = 6/244 (2%)
Frame = -3
Query: 718 LGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTRTVPL 551
L G+ R+S+S M+ +KA KY L V K +GG+KNGGTR V L
Sbjct: 50 LVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKL 109
Query: 550 KRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 377
++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKRVV + L
Sbjct: 110 RKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLA 169
Query: 376 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXX 197
SGLLLVTGP N PLRR Q++VI TST+I + N K+PKH D YF
Sbjct: 170 SGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYF---KKKKLRKPR 226
Query: 196 XKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLRSSQY 17
+EG +IF T+KEKY +EQRK DQK VD ++ I A P L+GYL++ F L + Y
Sbjct: 227 HQEG-EIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIP---QLQGYLRSVFALTNGIY 282
Query: 16 PHRL 5
PH+L
Sbjct: 283 PHKL 286
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 189 bits (460), Expect = 7e-47
Identities = 105/241 (43%), Positives = 143/241 (59%), Gaps = 2/241 (0%)
Frame = -3
Query: 718 LGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTRTVPLKRRK 539
L GV FS+SKMFHK+ +K K V VK++ GEKNGG R +PLK+ +
Sbjct: 30 LPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLPLKKER 89
Query: 538 SFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLL 365
YPT++ + + +S +P S+ +R + GTV ILLAG H GKRVV + L +GLL
Sbjct: 90 RSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFLKQLKTGLL 149
Query: 364 LVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEG 185
VTGP+ N CPLRRI Q YVI TST++ L KLP+ +D YF EG
Sbjct: 150 PVTGPYGVNGCPLRRINQIYVIATSTKLDLSKVKLPEGLDDRYF--KRNKGPKRGRKDEG 207
Query: 184 DDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLRSSQYPHRL 5
+IF K +++V SE+ K Q VD+ V++A+ A P+KKML YL A F LR+ YPH++
Sbjct: 208 -EIFEAKPQEHVVSEEHKKTQAEVDKQVLEAVKAHPEKKMLLHYLAATFSLRNRMYPHKM 266
Query: 4 R 2
+
Sbjct: 267 K 267
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 183 bits (446), Expect = 3e-45
Identities = 98/202 (48%), Positives = 130/202 (64%)
Frame = -3
Query: 607 VVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCIL 428
V+ K+IGG+KNGGTR V ++ FYP + + +K+ +IR +L+ GT+ IL
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILIL 103
Query: 427 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 248
LAG + GKRVVL+ L SGLLLV+GP N PLRR+ Q+ VI TSTRI + N K+P+H
Sbjct: 104 LAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVHQKLVIATSTRIDISNVKVPEHI 163
Query: 247 NDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKK 68
ND YF KEG DIFA+K E+Y P+EQRK DQ VD ++KAI A+PD
Sbjct: 164 NDTYF----RRHKVKKEAKEG-DIFASKPERYTPTEQRKKDQAEVDVQLLKAIKAQPDAA 218
Query: 67 MLRGYLKAAFGLRSSQYPHRLR 2
ML YL+ FGL+++ PHRL+
Sbjct: 219 MLVKYLRTIFGLKNNMIPHRLK 240
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 168 bits (408), Expect = 1e-40
Identities = 100/237 (42%), Positives = 133/237 (56%), Gaps = 1/237 (0%)
Frame = -3
Query: 718 LGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTRTVPLKRRK 539
L G+ R+S+S ++ K+A YK T K IGG+KNGG R VP++R
Sbjct: 15 LAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPVQRES 73
Query: 538 SFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 359
+YPT++ +R R + ++R ++ GTV ILLAG H GKRVV + L SGLLLV
Sbjct: 74 RYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVFLKQLNSGLLLV 131
Query: 358 TGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH-FNDDYFXXXXXXXXXXXXXKEGD 182
TGPF N PLRRIPQ YVI TST I + + KLP+H F D+ + K +
Sbjct: 132 TGPFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESY-----FKGEPKKKKRSE 186
Query: 181 DIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLRSSQYPH 11
D+F E+ PSEQR DQK VD+ ++ I A P+ K YL + F LR Q+PH
Sbjct: 187 DMFEEAAEEKKPSEQRIADQKAVDDQILPKISAVPNMKK---YLSSLFSLRKGQFPH 240
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 157 bits (382), Expect = 2e-37
Identities = 84/187 (44%), Positives = 112/187 (59%), Gaps = 3/187 (1%)
Frame = -3
Query: 556 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 386
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKRV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 385 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXX 206
L SGLLLVTGPF +N PLRR+ Q YVI TSTRI + F +PKH +D+YF
Sbjct: 114 ALKSGLLLVTGPFKYNGVPLRRVNQCYVIATSTRIDISKFDVPKHIDDEYF----RRVDL 169
Query: 205 XXXXKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLRS 26
+ +F+T+ +KY S+ RK DQK VD + AI + PD K+L YL++ F L
Sbjct: 170 KESKTDAGKLFSTETKKYTVSDIRKEDQKLVDNQIRAAIKSHPDSKILHAYLRSLFSLGK 229
Query: 25 SQYPHRL 5
YPH++
Sbjct: 230 RDYPHKM 236
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 140 bits (340), Expect = 2e-32
Identities = 75/156 (48%), Positives = 96/156 (61%), Gaps = 1/156 (0%)
Frame = -3
Query: 466 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 290
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 289 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVD 110
++++ K+P+H ND+YF G +IFA+ K +Y SEQRK D KTVD
Sbjct: 127 LKVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEYTVSEQRKKDIKTVD 180
Query: 109 EAVIKAIGARPDKKMLRGYLKAAFGLRSSQYPHRLR 2
++ AI P+ K L GYL F L +QYPH+++
Sbjct: 181 APILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQ 216
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 127 bits (306), Expect = 3e-28
Identities = 78/184 (42%), Positives = 105/184 (57%)
Frame = -3
Query: 556 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 377
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L
Sbjct: 57 PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114
Query: 376 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXX 197
SGLLLVTGPF N PLRR+ Q YVIGTST++ + L K F+D YF
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF---GKVAEKKKK 170
Query: 196 XKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLRSSQY 17
EG+ A K+EK + +K DQK VD A+IKAI A P+ L+ YL A F L+
Sbjct: 171 KTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPE---LKTYLGARFSLKQGMK 227
Query: 16 PHRL 5
PH L
Sbjct: 228 PHEL 231
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 126 bits (304), Expect = 5e-28
Identities = 76/204 (37%), Positives = 105/204 (51%)
Frame = -3
Query: 613 LTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVC 434
+ ++ K IGG KNGG R VP K+ +YP +K + K + +RP++K GT+
Sbjct: 20 IKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIV 78
Query: 433 ILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPK 254
ILLAG G RVV++ L SG LLVTGP+A N PL R+ QRYVI TST I + + K
Sbjct: 79 ILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDVSKVDV-K 137
Query: 253 HFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPD 74
++ YF D ++K E R DQK +D ++ I P
Sbjct: 138 KIDNAYFRKPQKKKKTDVMEV---DTAKKDEQKTKAIEARIADQKAIDAVLLPVIEKEP- 193
Query: 73 KKMLRGYLKAAFGLRSSQYPHRLR 2
+L YLK F L+ QYPH ++
Sbjct: 194 --LLSSYLKVKFSLKKGQYPHAMK 215
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 123 bits (296), Expect = 5e-27
Identities = 66/132 (50%), Positives = 81/132 (61%)
Frame = -3
Query: 487 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 308
F+ H RRIR ++ G V ILLAGRH KRVV + L SGLLLVTGPF +N PLRR+ QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 307 YVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKT 128
YVI T TRI + N K+P ND++F D IFA +++KY S+ RK
Sbjct: 146 YVIATKTRIKIKNIKIPSQLNDEFFRRQDLKTKKSV-----DKIFAEEEKKYTVSDDRKK 200
Query: 127 DQKTVDEAVIKA 92
QK VD A+I A
Sbjct: 201 LQKQVDTALIAA 212
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 119 bits (287), Expect = 6e-26
Identities = 80/180 (44%), Positives = 103/180 (57%), Gaps = 3/180 (1%)
Frame = -3
Query: 535 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 359
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 358 TGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDD 179
TGPF N P+RR+ Q YVI TST++ + + K F+D YF EG +
Sbjct: 110 TGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF---SRDKKQKAKKTEG-E 164
Query: 178 IFATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLRSSQYPHRL 5
+F T+KE K +P E +K DQK VD +IKAI A PD L+ YL A F LR PH +
Sbjct: 165 LFETEKEATKNLP-EFKKEDQKVVDAELIKAIEAVPD---LKTYLGARFSLRDGDKPHEM 220
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 118 bits (284), Expect = 1e-25
Identities = 72/190 (37%), Positives = 102/190 (53%)
Frame = -3
Query: 571 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 392
G R + K K +IR+++ + K +R ++ GTV I+LAGR AGKRVV
Sbjct: 54 GKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPGTVLIILAGRFAGKRVVA 111
Query: 391 VGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXX 212
+ L SGL+L+TGPF N PLRRI QRYVI TST+I + + K+ ND YF
Sbjct: 112 LKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKST 171
Query: 211 XXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGL 32
D+ K EK ++ R DQK+VD A++ + +K L YLK F L
Sbjct: 172 TKSEGAFFSDE---KKAEKKKIADSRVADQKSVDSAILAVL---KKEKFLTVYLKTKFYL 225
Query: 31 RSSQYPHRLR 2
+ ++PH+L+
Sbjct: 226 KKGEFPHQLK 235
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 112 bits (270), Expect = 7e-24
Identities = 65/170 (38%), Positives = 96/170 (56%)
Frame = -3
Query: 511 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSC 332
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL++VTGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 331 PLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKY 152
P+RR+ Y+I TST++ + + K F D+YF D TK +
Sbjct: 80 PVRRVNPAYIIATSTKVDVSKADVSK-FTDEYFKVDRSKLKKSKDAFM-DQGEETKVNRV 137
Query: 151 VPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLRSSQYPHRLR 2
V SE+RK Q+ +D ++I +I + P ++ YLK F L S +PH+L+
Sbjct: 138 V-SEERKKTQQALDASIIPSIQSNP---LMMSYLKTRFTLTSGMFPHKLK 183
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 108 bits (259), Expect = 2e-22
Identities = 74/213 (34%), Positives = 109/213 (51%), Gaps = 10/213 (4%)
Frame = -3
Query: 610 TVVVKQIGGEKN--GGTRTVPLKRRKS--FYPTQEKIRASSGGRPFSKHVRRIRPNLKIG 443
T+ K +G K G R +P +K+ +YP ++ + + + H ++RP+L+ G
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPG 61
Query: 442 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNF- 266
T+ ILLAGR GKRV+L+ L G+LLVTGPF N PLRR+ RYVI TS+ + L
Sbjct: 62 TILILLAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVPLRRVNARYVIATSSTVDLNGVD 121
Query: 265 --KLPKHFNDDYFXXXXXXXXXXXXXKEGDDIF---ATKKEKYVPSEQRKTDQKTVDEAV 101
L K +YF K+G++ F K EK + R DQK +D+A+
Sbjct: 122 QKTLEKVSQPEYF------TREKAEQKKGEEAFFKQGEKPEKKKVASARAADQKAIDQAL 175
Query: 100 IKAIGARPDKKMLRGYLKAAFGLRSSQYPHRLR 2
+ I P L YL + F LR+ PH ++
Sbjct: 176 LATIKKEP---FLGSYLASTFSLRTGDKPHEMK 205
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 102 bits (245), Expect = 8e-21
Identities = 67/183 (36%), Positives = 104/183 (56%)
Frame = -3
Query: 550 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 371
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 370 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXK 191
LL++GPF N PLRR+ RYVI TST++S+ + K FN +YF K
Sbjct: 62 TLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEK-FNVEYF----AKEKLTKKEK 116
Query: 190 EGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLRSSQYPH 11
+ ++F ++ K + +E R DQK VD+A+I I P +L+ YL A+F L++ PH
Sbjct: 117 KEANLFPEQQNKEIKAE-RVEDQKVVDKALIAEIKKTP---LLKQYLSASFSLKNGDKPH 172
Query: 10 RLR 2
L+
Sbjct: 173 MLK 175
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 99 bits (238), Expect = 5e-20
Identities = 50/122 (40%), Positives = 68/122 (55%)
Frame = -3
Query: 370 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXK 191
L GPF+ N P+RRI Q++V+ TST+I + K+P DDYF
Sbjct: 10 LFTFLGPFSINGVPVRRIAQKFVLPTSTKIDVSGVKIPATMTDDYFKRTKYFGK------ 63
Query: 190 EGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLRSSQYPH 11
E DIF K++Y ++ RK DQKT+D AV+ +I D K+L GYL+ FGL QYPH
Sbjct: 64 EKKDIFEQGKQEYTLTDARKADQKTIDTAVLGSIKKHTDGKLLAGYLRTNFGLSKRQYPH 123
Query: 10 RL 5
+
Sbjct: 124 NM 125
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 91.5 bits (217), Expect = 2e-17
Identities = 73/207 (35%), Positives = 103/207 (49%), Gaps = 21/207 (10%)
Frame = -3
Query: 559 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 380
V L RRK+ K + GR ++ V ++R +LK G V ILL G + GKRVVL+ +L
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVL 68
Query: 379 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXX 200
SGLLLVTGPF+FN PLRR+ RYVI TST + ++ P++
Sbjct: 69 KSGLLLVTGPFSFNGVPLRRVNSRYVIATSTNV----YEFPEYDGSSLKSSVERAVSDLT 124
Query: 199 XXKEGDD------IFATKKEKYVPSEQRKTDQKTVDE------AVIKAIGARPD------ 74
G F +K+K + D+ +V E A +KA+ ++ D
Sbjct: 125 DESFGKTKETKLAEFKDRKKKNKNKDSMFVDEPSVSEKSPELMAKLKALQSKVDDVLVPS 184
Query: 73 -KKM--LRGYLKAAFGLRSSQYPHRLR 2
KK L YLK+ F LR++ YPH L+
Sbjct: 185 LKKSQHLTKYLKSRFTLRNNMYPHLLK 211
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 85.0 bits (201), Expect = 2e-15
Identities = 62/173 (35%), Positives = 86/173 (49%), Gaps = 3/173 (1%)
Frame = -3
Query: 514 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNS 335
+R RP + +R+I P G V ILL+GR GKRVV + L SGLLLVTGPF N
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKING 97
Query: 334 CPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF---XXXXXXXXXXXXXKEGDDIFATK 164
PL+R+ YVI TST++ + NDDYF K G+ +
Sbjct: 98 VPLKRVNSAYVIPTSTKVDVTGVN-ANQINDDYFKRTQAQRRKNEQGFWAKRGELTVEQQ 156
Query: 163 KEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLRSSQYPHRL 5
+ + ++ QK+VD A+I AI ++L+ YL A F + + PH L
Sbjct: 157 TAEKTRLDGKRNTQKSVDAALITAI---KKTQLLKQYLGARFTIGKTTRPHEL 206
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 83.8 bits (198), Expect = 4e-15
Identities = 69/189 (36%), Positives = 88/189 (46%), Gaps = 25/189 (13%)
Frame = -3
Query: 493 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRR 320
RP K +R P + GTV ILLAGR GKRVVL+ L G+LLVTGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 319 IPQRYVIGTSTRISLGNF---KL-----PKHF---------NDDYFXXXXXXXXXXXXXK 191
+ RYVI TS ++ L K+ PK+F ++ F
Sbjct: 84 VNARYVIATSQKVDLAGIDEAKINEIAQPKYFTAEKSKEKAGEEAFFKQGEKPQVRLGNS 143
Query: 190 E------GDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLR 29
E DI KKE S R DQK +D+A+I I + L YL ++F LR
Sbjct: 144 ELEHGAHNADIVMQKKE---VSSSRVADQKAIDKALIANI---KKVEFLASYLASSFTLR 197
Query: 28 SSQYPHRLR 2
PH ++
Sbjct: 198 KGDKPHEMK 206
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 75.4 bits (177), Expect = 1e-12
Identities = 69/238 (28%), Positives = 109/238 (45%)
Frame = -3
Query: 718 LGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTRTVPLKRRK 539
L G R+S ++ +K Y + + V+K + G+KNGGT V L++ K
Sbjct: 53 LVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGTGVVKLQKMK 110
Query: 538 SFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 359
+ + + + S P KH + + N TV I++ G+H +RVV + L G LL+
Sbjct: 111 MYLGSCKAMAKS----PAFKHEKAVC-NSTPETVLIIITGQH--RRVVFLKQLSRGFLLI 163
Query: 358 TGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDD 179
TGP A N L R Q+ V+ TST I+ D YF +
Sbjct: 164 TGPLALNLVLLYRTHQKSVVITSTTINTQ--------TDVYF----KMKQLHKPRHQQGK 211
Query: 178 IFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLRSSQYPHRL 5
IF +K+KY +Q K D KT+D ++ P +K+ +L ++F L + PH+L
Sbjct: 212 IFDMEKDKY-GIKQCKADHKTLDSQIL------PKRKL---FLNSSFSLANGMCPHKL 259
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 73.7 bits (173), Expect = 4e-12
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Frame = -3
Query: 466 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 290
+R + G + I+LAGR G+R V++ LP +G L+V+GP +N P+RRI RYVI TS
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATS 88
Query: 289 TRISLGN----------FKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSE 140
T + + + F+ PK ++ + +K + S+
Sbjct: 89 TTVDISSVDTAPITAEVFQRPKAEKPTKSEGDFMGDKQKAKAEKAAKKTSKAGKKTLVSD 148
Query: 139 QRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLRSSQYPHR 8
R QK +D A+I AI K GYL++ F ++ PHR
Sbjct: 149 ARAQLQKKIDAALIAAIKKDAQGKEKAGYLRSVFTVKPGDAPHR 192
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 73.3 bits (172), Expect = 5e-12
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Frame = -3
Query: 604 VVKQIGGEKNGGTRTVPLKRRKSFYPTQEK--IRASSGGRPFS---KHV--RRIRPNLKI 446
VV G +KN V ++K P + K I GR + K V R++R ++++
Sbjct: 17 VVPATGDKKNALKHYVIKGQKKILTPVRAKKTISKKHYGRKLASKKKFVVQRKMRSSIQV 76
Query: 445 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRI 281
G V I+L G+H GKR ++ +L SGLL V GP+ N PL+R+ RY+I TST I
Sbjct: 77 GKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIVTSTNI 131
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 71.7 bits (168), Expect = 2e-11
Identities = 37/70 (52%), Positives = 43/70 (61%)
Frame = -3
Query: 442 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFK 263
TV I+L GRH GKRVV + L SGLLLVTGP A N PL R+ Q VI T T++ + K
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTKVDICKVK 72
Query: 262 LPKHFNDDYF 233
KH D F
Sbjct: 73 TSKHLTDASF 82
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 60.5 bits (140), Expect = 4e-08
Identities = 30/58 (51%), Positives = 38/58 (65%)
Frame = -3
Query: 406 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 233
KRVV + L SGLLL+TG F N PLRR+ Q YVI TST++ + + K F+D YF
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQAYVIATSTKVDIPKVNVEK-FDDKYF 212
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 54.8 bits (126), Expect = 2e-06
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = -3
Query: 463 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTR 284
RP+LK+GTV I++ G H GKR V+V +G++ + GP P+ I Q Y+I TST
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGPVV----PVNEISQDYLIATSTS 108
Query: 283 ISL 275
I +
Sbjct: 109 IEV 111
>UniRef50_A0EZZ8 Cluster: 60S ribosomal protein L6; n=5;
Euteleostomi|Rep: 60S ribosomal protein L6 -
Scophthalmus maximus (Turbot)
Length = 54
Score = 50.4 bits (115), Expect = 4e-05
Identities = 25/53 (47%), Positives = 33/53 (62%)
Frame = -3
Query: 163 KEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLRSSQYPHRL 5
KEKY +EQRK DQK VD ++ + P LRGYL+++F L YPH+L
Sbjct: 3 KEKYQLTEQRKEDQKAVDAQLLTLVKKTP---QLRGYLRSSFCLSGGVYPHKL 52
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 48.4 bits (110), Expect = 2e-04
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = -3
Query: 520 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAF 341
EK +A + +P VRR +L G V ++L G A +RVV + L + L GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 340 NSCPLRRIPQRYVIGTSTRISL 275
N PL RI +RY++ TST + L
Sbjct: 65 NGIPLFRIDERYLLATSTVLDL 86
>UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillardia
theta|Rep: 60S ribosomal protein L6B - Guillardia theta
(Cryptomonas phi)
Length = 169
Score = 44.0 bits (99), Expect = 0.004
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = -3
Query: 457 NLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRIS 278
+ KIG + I+ + GK+ V +G G LL++G FN +I +YV+ + +
Sbjct: 41 DFKIGDILIIKKRNNYGKKCVFLGHTDDGNLLLSGIMKFNGIGYLKIHWKYVVKSGVSLK 100
Query: 277 LGNFKLPKHFNDDY 236
NF L KH N DY
Sbjct: 101 GLNF-LTKHTNKDY 113
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 40.7 bits (91), Expect = 0.035
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = -3
Query: 460 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYV 302
P + +G + +++AGR AG++VV+V I+ +LVTG N RR+ +++
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHI 53
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.062
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -3
Query: 463 RPNLKIGTVCILLAGRHAGKRVVLVGILP 377
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 39.5 bits (88), Expect = 0.082
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -3
Query: 460 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 317
P +++G VCI AGR AGK V+V IL ++V G C ++ +
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIKHL 49
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 39.1 bits (87), Expect = 0.11
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = -3
Query: 535 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 356
FYP + ++ + +K ++ +R ++ GTV I+LAGR VV + L SGLLL+T
Sbjct: 207 FYPADD-VKKPLINKHKAKPIK-LRASITPGTVLIILAGR-----VVFLKQLSSGLLLIT 259
Query: 355 GPFAFNSCP 329
G F N P
Sbjct: 260 GSFKINDVP 268
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 38.3 bits (85), Expect = 0.19
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = -3
Query: 454 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 275
+ IG V + + GR AG++ V+V I+ +++TGP RR+ ++ T +I +
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
>UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2;
Lactococcus lactis subsp. cremoris|Rep:
Cation-transporting ATPase - Lactococcus lactis subsp.
cremoris (strain MG1363)
Length = 841
Score = 35.9 bits (79), Expect = 1.0
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = -3
Query: 403 RVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR--YVIGTSTRIS 278
+++++GI+P +L++ F F+S L IPQR +IGT+ I+
Sbjct: 215 KIIVIGIIPISILVLLNQFVFSSLDLSVIPQRKTAIIGTAATIT 258
>UniRef50_Q66GS5 Cluster: At1g78120; n=2; Arabidopsis thaliana|Rep:
At1g78120 - Arabidopsis thaliana (Mouse-ear cress)
Length = 530
Score = 34.3 bits (75), Expect = 3.1
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = -1
Query: 222 RSASNVQSNAKRVMTS---LPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADT 52
R+ N+ S + +T+ LP+K +T S++P + S + KP + R S+++
Sbjct: 41 RAKDNLSSKSSTTVTNPKILPRKSTDT----SSQPKKSDSQKPQQKPKPDENHPRKSSES 96
Query: 51 SRRPSDSARANIPIG 7
+R+ SDSAR +I G
Sbjct: 97 ARKSSDSARKSISSG 111
>UniRef50_Q06VE0 Cluster: Putative uncharacterized protein; n=1;
Trichoplusia ni ascovirus 2c|Rep: Putative
uncharacterized protein - Trichoplusia ni ascovirus 2c
Length = 648
Score = 33.9 bits (74), Expect = 4.1
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Frame = -1
Query: 297 APPPEFHSATSNCQNTSMMITSRR----IRSASNVQSNAKRVMTSLPQKKRNTFHLSSAK 130
+P P + S ++ S TSRR RS S Q+ ++ S + + + SA
Sbjct: 322 SPSPARSKSRSQTRSRSRS-TSRRSASPARSKSRSQTKSRSRSPSPARSRSRSTSRRSAS 380
Query: 129 PIRRQS-TRL*SKPSEPDPTRRCSADTSRRPSDSARA 22
P R +S ++ S+ P P R S TSRR + AR+
Sbjct: 381 PARSKSRSQTKSRSRSPSPARSRSRSTSRRSASPARS 417
>UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas syringae pv. syringae
(strain B728a)
Length = 676
Score = 33.9 bits (74), Expect = 4.1
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = -3
Query: 496 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 338
GR ++ R++RP LK+ + + G +A V G L +G+ L+T PFAF+
Sbjct: 617 GRQLAEIARQLRPELKV----LFITG-YAEHAAVRGGFLDTGMQLITKPFAFD 664
>UniRef50_A0JCX9 Cluster: Putative uncharacterized protein; n=1;
Glyptapanteles indiensis|Rep: Putative uncharacterized
protein - Glyptapanteles indiensis
Length = 1065
Score = 33.9 bits (74), Expect = 4.1
Identities = 24/83 (28%), Positives = 44/83 (53%)
Frame = -1
Query: 285 EFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTR 106
++ S N ++I S + N QSN++ + T++P K+N+ H S+ P+ Q++
Sbjct: 523 QYMSINQNSFKQDLLIGSPE-NNIYNHQSNSRTIRTTIPSMKQNSTHPSN--PM-HQTSE 578
Query: 105 L*SKPSEPDPTRRCSADTSRRPS 37
L S+ + P ++ S S RPS
Sbjct: 579 L-SQQRQSQPNQQDSQQHSHRPS 600
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 33.9 bits (74), Expect = 4.1
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 580 KNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 449
K R LK SF P + + ASS GRP K +R+R LK
Sbjct: 128 KEDHNREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 5.4
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 381 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 515
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_A7E738 Cluster: Predicted protein; n=1; Sclerotinia
sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
sclerotiorum 1980
Length = 331
Score = 33.5 bits (73), Expect = 5.4
Identities = 29/89 (32%), Positives = 42/89 (47%)
Frame = -1
Query: 297 APPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRR 118
AP S+TS+ QN S +SR ++++S+ S AKR K T SS+ P +R
Sbjct: 15 APSSTNGSSTSSAQNASGT-SSRTVKTSSS--SPAKRGDVKESSKPSRTVTASSSSPAKR 71
Query: 117 QSTRL*SKPSEPDPTRRCSADTSRRPSDS 31
SKPS T+ S+ S D+
Sbjct: 72 DDVNESSKPSR---TKAASSSNSAGGGDN 97
>UniRef50_Q6IMG0 Cluster: GRP21; n=11; Eukaryota|Rep: GRP21 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1193
Score = 33.1 bits (72), Expect = 7.1
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -1
Query: 300 SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLS--SAKP 127
S P S+ + +S I+ +S S S + ++ P+ K ++ S S+KP
Sbjct: 1048 STKPKSKPSSKPTSKPSSKPISKPSTKSTSKPSSKSTSKPSTKPKSKPSSKPTSKPSSKP 1107
Query: 126 IRRQSTRL*SKPSEPDPTRRCSADTSRRPS 37
I + ST+ SKPS PT + S ++ +PS
Sbjct: 1108 ISKPSTKSTSKPSS-KPTSKPSTVSASKPS 1136
>UniRef50_Q2HF67 Cluster: Putative uncharacterized protein; n=2;
Pezizomycotina|Rep: Putative uncharacterized protein -
Chaetomium globosum (Soil fungus)
Length = 240
Score = 33.1 bits (72), Expect = 7.1
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -1
Query: 273 ATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*S- 97
A + T ++ SRR S V S R+ S+P + RN +P ++Q T S
Sbjct: 20 APTRTSATLSLLCSRRHLPVS-VASTTTRLAHSIP-RPRNGSPFGQKQPQQQQQTITPSP 77
Query: 96 KPSEPDPTRRCSADTSRRP 40
PSEP PT +A +S +P
Sbjct: 78 SPSEPSPTAPATATSSPQP 96
>UniRef50_Q7NID4 Cluster: Gll2249 protein; n=8; Cyanobacteria|Rep:
Gll2249 protein - Gloeobacter violaceus
Length = 544
Score = 32.7 bits (71), Expect = 9.4
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = -3
Query: 406 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDD 239
+ +V G + GL+L F S PL Q + +G +T +G LP+HFNDD
Sbjct: 41 QEIVTCGQVLKGLIL--NGLGFVSAPLYLFEQ-FFVGKATEHLIGPGVLPEHFNDD 93
>UniRef50_Q5QLZ3 Cluster: Gastric mucin-like protein; n=4; Oryza
sativa|Rep: Gastric mucin-like protein - Oryza sativa
subsp. japonica (Rice)
Length = 579
Score = 32.7 bits (71), Expect = 9.4
Identities = 25/84 (29%), Positives = 40/84 (47%)
Frame = -1
Query: 288 PEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQST 109
P ++ S S +I+S S N ++ + P K+ +T LSS+KP S
Sbjct: 73 PARSNSVSRPSIQSTLISSNNRSSVVNASISSVCSPPTTPSKRTST--LSSSKPSVPASR 130
Query: 108 RL*SKPSEPDPTRRCSADTSRRPS 37
++ ++PS P TR C+ RPS
Sbjct: 131 QVPTRPSTPTKTRPCT-PVKPRPS 153
>UniRef50_A1CF41 Cluster: Translation factor pelota, putative; n=7;
Pezizomycotina|Rep: Translation factor pelota, putative
- Aspergillus clavatus
Length = 410
Score = 32.7 bits (71), Expect = 9.4
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -1
Query: 564 EQYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGS 463
++Y +V S +TP ++ +P LV VHSAS Y S
Sbjct: 239 QKYIQSVASTTTPALKRLLPSLVVVHSASGYLHS 272
>UniRef50_Q8BTI8 Cluster: Serine/arginine repetitive matrix protein 2;
n=41; root|Rep: Serine/arginine repetitive matrix protein
2 - Mus musculus (Mouse)
Length = 2703
Score = 32.7 bits (71), Expect = 9.4
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Frame = -1
Query: 342 SIRARYAAFLSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQK 163
S A+ + L+A+ A S++S+ ++S +S S+S+ S++ +SLP +
Sbjct: 2466 STGAQQPSTLAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPAQ 2525
Query: 162 KRNTF-HLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSRRPSDSARAN 19
+ S P+ +++ R +P EP P +R +S S S+ ++
Sbjct: 2526 PEVALKRVPSPTPVPKEAIRE-GRPQEPTPAKRKRRSSSSSSSSSSSSS 2573
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 752,573,053
Number of Sequences: 1657284
Number of extensions: 15541621
Number of successful extensions: 47832
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 45493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47772
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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