Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14d15
(463 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 152 2e-38
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 29 0.46
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 28 0.80
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 27 1.1
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 27 1.8
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 26 3.2
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 4.3
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 5.6
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 5.6
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 7.4
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 152 bits (369), Expect = 2e-38
Identities = 70/92 (76%), Positives = 83/92 (90%)
Frame = -2
Query: 327 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRK 148
+K Q S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+ITTRK
Sbjct: 8 QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67
Query: 147 TPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVK 52
TP GEGSKTW+ ++MRIHKR+IDLHSPSEIVK
Sbjct: 68 TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVK 99
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 28.7 bits (61), Expect = 0.46
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -2
Query: 210 KLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 58
K+ +KGP +P K+ T ++P S + + F+ H R+I L+S + +
Sbjct: 92 KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.9 bits (59), Expect = 0.80
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 345 VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 196
+S IEKP+A SPIH + +R L+ V GA++ + VK
Sbjct: 891 LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 354 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 256
A V + D+EKPQ +V+ R+ L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 26.6 bits (56), Expect = 1.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 334 RHRETPGRGLPYSP 293
R ETPGR LP+SP
Sbjct: 163 RANETPGRNLPFSP 176
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 25.8 bits (54), Expect = 3.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 20 GLEWLIEGDPGFTISEGECRSITLLWIR 103
GLEW+++ + E ECR + + +I+
Sbjct: 907 GLEWIVKPFAISKVIEAECRKLAIKYIK 934
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 4.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 373 IPAEINNFSIKNCSALNRRNL 435
+ +E+N+ IKN S LN RNL
Sbjct: 592 LESELNSSKIKNESLLNERNL 612
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 83 STYTLPLKL*NQDHPQLTI 27
STYT PL+ N +HP T+
Sbjct: 192 STYTTPLQSINNEHPLPTV 210
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 5.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 199 KGPSPHANQDPAYHHP*NSLW*RFKDLGSFSDANPQESD 83
K P+ +ANQ P + N+ W + G FS+ N D
Sbjct: 916 KTPAWNANQTPMVANGTNTSWGQTPAYGGFSETNWDTED 954
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 7.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 153 RKTPCGEGSKTWDRFQM 103
R +P GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,268
Number of Sequences: 5004
Number of extensions: 39084
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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