Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14d13
(247 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin pr... 115 9e-29
AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin pr... 115 9e-29
AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin pr... 106 3e-26
AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin pr... 104 2e-25
AY884062-1|AAX84203.1| 712|Tribolium castaneum laccase 2B protein. 25 0.16
AY884061-1|AAX84202.1| 717|Tribolium castaneum laccase 2A protein. 25 0.16
AM292364-1|CAL23176.2| 353|Tribolium castaneum gustatory recept... 22 0.85
L01617-1|AAA30097.1| 46|Tribolium castaneum zinc finger protei... 19 7.9
AY074761-1|AAL71874.1| 314|Tribolium castaneum ultrabithorax pr... 19 7.9
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept... 19 7.9
AM292324-1|CAL23136.1| 398|Tribolium castaneum gustatory recept... 19 7.9
>AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin
protein.
Length = 76
Score = 115 bits (276), Expect = 9e-29
Identities = 51/68 (75%), Positives = 61/68 (89%)
Frame = -3
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 51
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 50 IQKESTLH 27
IQKESTLH
Sbjct: 61 IQKESTLH 68
>AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin
protein.
Length = 685
Score = 115 bits (276), Expect = 9e-29
Identities = 51/68 (75%), Positives = 61/68 (89%)
Frame = -3
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 51
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 50 IQKESTLH 27
IQKESTLH
Sbjct: 61 IQKESTLH 68
Score = 115 bits (276), Expect = 9e-29
Identities = 51/68 (75%), Positives = 61/68 (89%)
Frame = -3
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 51
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 50 IQKESTLH 27
IQKESTLH
Sbjct: 137 IQKESTLH 144
Score = 115 bits (276), Expect = 9e-29
Identities = 51/68 (75%), Positives = 61/68 (89%)
Frame = -3
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 51
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 50 IQKESTLH 27
IQKESTLH
Sbjct: 213 IQKESTLH 220
Score = 115 bits (276), Expect = 9e-29
Identities = 51/68 (75%), Positives = 61/68 (89%)
Frame = -3
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 51
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 50 IQKESTLH 27
IQKESTLH
Sbjct: 289 IQKESTLH 296
Score = 115 bits (276), Expect = 9e-29
Identities = 51/68 (75%), Positives = 61/68 (89%)
Frame = -3
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 51
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 50 IQKESTLH 27
IQKESTLH
Sbjct: 365 IQKESTLH 372
Score = 115 bits (276), Expect = 9e-29
Identities = 51/68 (75%), Positives = 61/68 (89%)
Frame = -3
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 51
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 50 IQKESTLH 27
IQKESTLH
Sbjct: 517 IQKESTLH 524
Score = 115 bits (276), Expect = 9e-29
Identities = 51/68 (75%), Positives = 61/68 (89%)
Frame = -3
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 51
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 50 IQKESTLH 27
IQKESTLH
Sbjct: 593 IQKESTLH 600
Score = 115 bits (276), Expect = 9e-29
Identities = 51/68 (75%), Positives = 61/68 (89%)
Frame = -3
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 51
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 50 IQKESTLH 27
IQKESTLH
Sbjct: 669 IQKESTLH 676
Score = 112 bits (270), Expect = 5e-28
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -3
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 51
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQR IFAGKQLED +T++DYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 440
Query: 50 IQKESTLH 27
IQKESTLH
Sbjct: 441 IQKESTLH 448
>AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin
protein.
Length = 64
Score = 106 bits (255), Expect = 3e-26
Identities = 47/64 (73%), Positives = 57/64 (89%)
Frame = -3
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 51
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 50 IQKE 39
IQKE
Sbjct: 61 IQKE 64
>AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin
protein.
Length = 112
Score = 104 bits (249), Expect = 2e-25
Identities = 46/64 (71%), Positives = 56/64 (87%)
Frame = -3
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 51
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQR IFAGKQLED +T++DYN
Sbjct: 49 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 108
Query: 50 IQKE 39
IQKE
Sbjct: 109 IQKE 112
Score = 75.4 bits (177), Expect = 9e-17
Identities = 33/40 (82%), Positives = 37/40 (92%)
Frame = -3
Query: 146 KIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLH 27
KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH
Sbjct: 1 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 40
>AY884062-1|AAX84203.1| 712|Tribolium castaneum laccase 2B protein.
Length = 712
Score = 24.6 bits (51), Expect = 0.16
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -2
Query: 96 CGQTIGRFQNYGRLQYSKGIY---SSPWCYDY 10
CG I R Q G L+Y+KG Y +P YDY
Sbjct: 416 CG--IRRVQQLGILRYAKGPYQPSQAPPTYDY 445
>AY884061-1|AAX84202.1| 717|Tribolium castaneum laccase 2A protein.
Length = 717
Score = 24.6 bits (51), Expect = 0.16
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -2
Query: 96 CGQTIGRFQNYGRLQYSKGIY---SSPWCYDY 10
CG I R Q G L+Y+KG Y +P YDY
Sbjct: 416 CG--IRRVQQLGILRYAKGPYQPSQAPPTYDY 445
>AM292364-1|CAL23176.2| 353|Tribolium castaneum gustatory receptor
candidate 43 protein.
Length = 353
Score = 22.2 bits (45), Expect = 0.85
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 102 YLCGQTIGRFQNYGRLQYSKGIY 34
+LC T+ FQNY Y +Y
Sbjct: 146 FLCRHTVEYFQNYIHFFYQLLLY 168
>L01617-1|AAA30097.1| 46|Tribolium castaneum zinc finger protein
protein.
Length = 46
Score = 19.0 bits (37), Expect = 7.9
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +2
Query: 20 HHGEE*IPFEYCNR 61
H GE+ YCNR
Sbjct: 30 HTGEKPFSCTYCNR 43
>AY074761-1|AAL71874.1| 314|Tribolium castaneum ultrabithorax
protein.
Length = 314
Score = 19.0 bits (37), Expect = 7.9
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = +3
Query: 183 FGGNGFARQCFDEYLHFYTI 242
FG NG R+ Y + T+
Sbjct: 217 FGANGLRRRGRQTYTRYQTL 236
>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
candidate 46 protein.
Length = 1451
Score = 19.0 bits (37), Expect = 7.9
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -3
Query: 110 QRLIFAGKQLEDSKTMADYNIQKESTL 30
+RLI + +++ T+ DY K+ L
Sbjct: 108 KRLIHFDTKCQENSTVIDYKRHKKRLL 134
>AM292324-1|CAL23136.1| 398|Tribolium castaneum gustatory receptor
candidate 3 protein.
Length = 398
Score = 19.0 bits (37), Expect = 7.9
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -3
Query: 110 QRLIFAGKQLEDSKTMADYNIQKESTL 30
+RLI + +++ T+ DY K+ L
Sbjct: 126 KRLIHFDTKCQENSTVIDYKRHKKRLL 152
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,552
Number of Sequences: 336
Number of extensions: 1150
Number of successful extensions: 36
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 122,585
effective HSP length: 46
effective length of database: 107,129
effective search space used: 3749515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
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