Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d11
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...   115   6e-27
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    31   0.13 
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    28   1.2  
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.1  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    27   2.8  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    27   3.8  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   3.8  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   3.8  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    26   6.6  
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    26   6.6  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   8.7  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    25   8.7  

>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score =  115 bits (277), Expect = 6e-27
 Identities = 56/120 (46%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
 Frame = -1

Query: 656  LALPFFGFSEPIA-PSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHKLEITMLSQG 480
            LA+  F FS+PIA P      +    +WDR+ +  + TLQ+ +D+F+ E  LE+TMLS G
Sbjct: 890  LAIGLFTFSDPIASPKMKVNGKEIDKIWDRYNLP-DCTLQELIDYFQKEEGLEVTMLSSG 948

Query: 479  VCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDVEVPYV 300
            V +LY+ F P  K  ERL L +SE+V +++KKKLEP    LV E+CC+D +G DVEVP++
Sbjct: 949  VSLLYANFQPPKKLAERLPLKISELVEQITKKKLEPFRKHLVLEICCDDANGEDVEVPFI 1008



 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 21/37 (56%), Positives = 24/37 (64%)
 Frame = -3

Query: 744 VXAGLVCLELYKLAQGFNKLEVFKNGFVNLGPALLRF 634
           V +GLVCLEL KL  G  K+E +KNGF NL   L  F
Sbjct: 861 VVSGLVCLELVKLVDGKKKIEEYKNGFFNLAIGLFTF 897


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +1

Query: 292 VYFTYGTSTSFPSSSLQHNSKTNAFTCGSNFFLDTFVTTSDIGRFNRSSRLALGMKN 462
           +YFT GT+  FP   L+HN  +  F C S   L   +T  D+  F   S  +  +KN
Sbjct: 23  LYFTIGTN--FPHDELRHNLLSTLF-CSSMLHLSKGLTVKDVRIFFHDSIGSTLLKN 76


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 539 QFLDHFKNEHKLEITMLSQGVCMLYSFFMPKAKRLER 429
           +FL   K   KLE    S+ V ML +  + KAKRLE+
Sbjct: 231 EFLRLSKRMKKLEELWTSENVSMLDALLLNKAKRLEQ 267


>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 584 STYSHCRCWSTAQSVQRNRRRAGPRLTKPFLNTSSLLKPWASL*SSRQ 727
           S+  HC CW +  S+ R      PR+  P    +  ++P+  L S RQ
Sbjct: 6   SSLVHC-CWVSPPSLTRLPAFPSPRILSPCYCYNKRIRPFRGLTSYRQ 52


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 680 CSRTASSTLALPFFGFSEPIAPSTNTYN 597
           C++ +S TL+LP  G ++P+    + Y+
Sbjct: 200 CNQCSSKTLSLPHLGINQPVRVCDSCYS 227


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 148 LQSKFQIITHSRFVSFVCSLSNDDVLHFYY-YFTS*KSFL-PNSIFY 14
           L S+F+    S F  F    S+DD  HFY   +T   + L PNS+ Y
Sbjct: 475 LWSRFRFPKDSEFPEFFKCSSDDDNTHFYVNLYTGETTMLFPNSMPY 521


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 631  EKPKKGRAKVDEAVLEHFQLIEALGQF 711
            EK +  R   D+ V+  FQL EALGQ+
Sbjct: 2935 EKLRLSRLMSDDGVVYPFQLREALGQY 2961


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 391 DTFVTTSDIGRFNRSSRLALGMKNE*SMH 477
           +TFVTT DI + +R+S L+L   +   +H
Sbjct: 437 ETFVTTDDITQLSRTSTLSLSTASPRLVH 465


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -1

Query: 704 PKASISWKCSRTASSTLALPFFGFSEPIAP 615
           P  SI  K    +S TLALPF  F  PI P
Sbjct: 6   PTVSIYNKDGSVSSETLALPFV-FKAPIRP 34


>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 543 TAIFRSLQKRTQVGDHHVVSRCVHALFVLHAQSQ 442
           TAI R +    +V D +  S CV  L +LHA+S+
Sbjct: 47  TAI-REISLLKEVNDENNRSNCVRLLDILHAESK 79


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 665 SSTLALPFFGFSEPIAPSTNTYNENKWTLWDRFEVKGEITLQQFLDHF 522
           S T++  + GF   ++   +   E  W LWD   +K  +T+++F  HF
Sbjct: 240 SCTISTKYVGFFTFLSIGLSVCLE-LWYLWD---IKTGLTVERFFQHF 283


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 739 GWLSLPRTLQTGP 701
           GWLSLPR+L T P
Sbjct: 430 GWLSLPRSLFTQP 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,013
Number of Sequences: 5004
Number of extensions: 60696
Number of successful extensions: 188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)