Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14d11
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31... 94 1e-19
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29... 93 3e-19
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 87 2e-17
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 85 4e-17
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262... 28 9.1
>12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-314584,
314589-315192,315674-315718,316100-316317,317020-317332,
318681-318716
Length = 1054
Score = 93.9 bits (223), Expect = 1e-19
Identities = 46/125 (36%), Positives = 72/125 (57%)
Frame = -1
Query: 674 RTASSTLALPFFGFSEPIAPSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHKLEIT 495
R + LA+P F +EP+ P T + + WT+WDR+ + G ITL++ LD K E L
Sbjct: 928 RNTFANLAIPLFSMAEPVPPKTIKHQDMAWTVWDRWTITGNITLRELLDWLK-EKGLNAY 986
Query: 494 MLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDV 315
+S G +LY+ P+ K ERL+ + +V +V+K ++ P+ L + C DDD NDV
Sbjct: 987 SISCGTSLLYNSMFPRHK--ERLDKKVVDVAREVAKVEVPPYRRHLDVVVACEDDDDNDV 1044
Query: 314 EVPYV 300
++P V
Sbjct: 1045 DIPLV 1049
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = -3
Query: 735 GLVCLELYKLAQGFNKLEVFKNGFVNL 655
GLVCLELYK+ G +K+E ++N F NL
Sbjct: 908 GLVCLELYKVLGGGHKVEDYRNTFANL 934
>11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-292513,
295071-295646,295828-296260,296470-297338,297433-298227,
298709-298753,299135-299352,300055-300364,302715-302984
Length = 1331
Score = 92.7 bits (220), Expect = 3e-19
Identities = 45/123 (36%), Positives = 71/123 (57%)
Frame = -1
Query: 674 RTASSTLALPFFGFSEPIAPSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHKLEIT 495
R + LA+P F +EP+ P T + + WT+WDR+ + G ITL++ LD K E L
Sbjct: 1052 RNTFANLAIPLFSMAEPVPPKTIKHQDMAWTVWDRWTITGNITLRELLDWLK-EKGLNAY 1110
Query: 494 MLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDV 315
+S G +LY+ P+ K ERL+ + +V +V+K ++ P+ L + C DDD NDV
Sbjct: 1111 SISCGTSLLYNSMFPRHK--ERLDKKVVDVAREVAKVEVPPYRRHLDVVVACEDDDDNDV 1168
Query: 314 EVP 306
++P
Sbjct: 1169 DIP 1171
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = -3
Query: 735 GLVCLELYKLAQGFNKLEVFKNGFVNL 655
GLVCLELYK+ G +K+E ++N F NL
Sbjct: 1032 GLVCLELYKVLGGGHKVEDYRNTFANL 1058
>07_03_1774 + 29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 86.6 bits (205), Expect = 2e-17
Identities = 42/125 (33%), Positives = 68/125 (54%)
Frame = -1
Query: 674 RTASSTLALPFFGFSEPIAPSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHKLEIT 495
R + LALP F +EP+ P + + WT+WDR+ +KG +T+ + L F ++ L
Sbjct: 959 RNTFANLALPLFSMAEPVPPKVMKHQDMSWTVWDRWSIKGNLTVAELLQWF-SDKGLTAY 1017
Query: 494 MLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDV 315
+S G +LY+ A+ ERLN + +V +V+K + + L C DDDGND+
Sbjct: 1018 SISCGTSLLYNNMF--ARHKERLNKKVVDVAREVAKVDVPEYRKHLDLVAACEDDDGNDI 1075
Query: 314 EVPYV 300
++P V
Sbjct: 1076 DIPLV 1080
Score = 35.9 bits (79), Expect = 0.034
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -3
Query: 735 GLVCLELYKLAQGFNKLEVFKNGFVNL 655
GLVCLELYK+ G + +E ++N F NL
Sbjct: 939 GLVCLELYKVIAGEHPIEDYRNTFANL 965
>03_02_0665 - 10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 85.4 bits (202), Expect = 4e-17
Identities = 39/125 (31%), Positives = 72/125 (57%)
Frame = -1
Query: 674 RTASSTLALPFFGFSEPIAPSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHKLEIT 495
R + + LA+P F +EP+ P + + +WT+WDR+ ++G IT+ + L + ++ L
Sbjct: 1053 RNSFANLAIPMFSMAEPLPPKVIKHQDMRWTIWDRWSIEGNITVAELL-KWLSDKGLSAY 1111
Query: 494 MLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDV 315
+S G +LY+ P+ K +R+N + +V +V+K + + L + C DDDGNDV
Sbjct: 1112 SVSCGTSLLYNTMFPRHK--DRVNKKLVDVAKEVAKVDVPAYRRHLDVVVACEDDDGNDV 1169
Query: 314 EVPYV 300
++P +
Sbjct: 1170 DIPLI 1174
Score = 36.3 bits (80), Expect = 0.026
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -3
Query: 735 GLVCLELYKLAQGFNKLEVFKNGFVNL 655
GLVCLELYK+ G + +E ++N F NL
Sbjct: 1033 GLVCLELYKVLAGGHPVEDYRNSFANL 1059
>11_06_0120 -
20324794-20325204,20325416-20325545,20326172-20326255,
20326584-20326823,20327418-20327498,20327761-20328113
Length = 432
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -2
Query: 550 LHYSNF*ITSKTNTSWRSPCCLKVCACFIRSSCPKPSGW 434
+ Y + +K N W P C +C C S C GW
Sbjct: 252 MRYGENVLEAKKNPDWICPVCRGICNC---SICRTKKGW 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,606,993
Number of Sequences: 37544
Number of extensions: 382689
Number of successful extensions: 999
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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