Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d11
         (746 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    33   0.012
AY994094-1|AAX86007.1|   41|Anopheles gambiae metallothionein 2 ...    24   5.7  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   5.7  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    23   7.6  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   7.6  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 32.7 bits (71), Expect = 0.012
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
 Frame = -1

Query: 545  LQQFLDHFKNEHKL-----EITMLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSK-- 387
            L QFL   + + KL     E+ +    +C L      +A+++E +     +V    S+  
Sbjct: 986  LDQFLSFSEQKEKLYKRKAELDVGKDKICELMQLL--EARKVEAIQFTFRQVAANFSEVF 1043

Query: 386  KKLEPHVNALVFELCCNDDDGNDVE 312
            KKL P  N  +     ND +GND+E
Sbjct: 1044 KKLVPQGNGHLILRTTNDQEGNDME 1068


>AY994094-1|AAX86007.1|   41|Anopheles gambiae metallothionein 2
           protein.
          Length = 41

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 499 SPCCLKVCACFIRSSCPKPSGWND*TCQ 416
           SP C   C C  R +CP   G  +  C+
Sbjct: 14  SPNCGAGCGCESRCTCPCKDGAKEGCCK 41


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +1

Query: 205 IEPSLRSGNYYFSA 246
           +E +L+SGNY+F+A
Sbjct: 836 MEKALKSGNYFFTA 849


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 450 GHEERIKHAHTLRQHGD 500
           G EE++ H  T  +HGD
Sbjct: 737 GEEEKLSHEPTPTEHGD 753


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = -2

Query: 478 CACFIRSSCPKPSGWND*TCQCRRWSQKC 392
           C C     C    GW    C CR  ++ C
Sbjct: 611 CVC---GQCECREGWTGPACDCRASNETC 636


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 745,378
Number of Sequences: 2352
Number of extensions: 15341
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76923555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)